miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17050 5' -54.4 NC_004333.2 + 11853 0.66 0.737669
Target:  5'- cGguACAUCGcuuccGU-CUGCCGgUCGGCCGa -3'
miRNA:   3'- -CguUGUAGU-----CAcGGCGGCaAGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 47803 0.66 0.726936
Target:  5'- gGCAACucuGUCGGccUGCaGCUGUUCAaagcGCCGa -3'
miRNA:   3'- -CGUUG---UAGUC--ACGgCGGCAAGU----CGGC- -5'
17050 5' -54.4 NC_004333.2 + 8560 0.66 0.726936
Target:  5'- gGCuGgAUC-GUGuuGCCGaaUUCAGCCa -3'
miRNA:   3'- -CGuUgUAGuCACggCGGC--AAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 5589 0.66 0.726936
Target:  5'- uGCGGcCAUCGG-GCaugCGCaCGUUCAGgCCGu -3'
miRNA:   3'- -CGUU-GUAGUCaCG---GCG-GCAAGUC-GGC- -5'
17050 5' -54.4 NC_004333.2 + 2713 0.66 0.716104
Target:  5'- gGCGGCA--GGUGgaCGCCGUagUUGGCCGc -3'
miRNA:   3'- -CGUUGUagUCACg-GCGGCA--AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 42650 0.66 0.705187
Target:  5'- cGCAGCGUCuc--CCGUCGagCAGCCc -3'
miRNA:   3'- -CGUUGUAGucacGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 18866 0.66 0.705187
Target:  5'- cGCAACG-CAuUGCCGCCGgggcGCCc -3'
miRNA:   3'- -CGUUGUaGUcACGGCGGCaaguCGGc -5'
17050 5' -54.4 NC_004333.2 + 26830 0.66 0.694196
Target:  5'- uGCAGCGUCguagcgAGUGCUGUCGcgUCGcGCuCGg -3'
miRNA:   3'- -CGUUGUAG------UCACGGCGGCa-AGU-CG-GC- -5'
17050 5' -54.4 NC_004333.2 + 34814 0.66 0.694196
Target:  5'- aUAGCAUCgaaGGUGcCCGCCag-CAGUCGa -3'
miRNA:   3'- cGUUGUAG---UCAC-GGCGGcaaGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 2637 0.66 0.694196
Target:  5'- cGCGguuCAUCGcgcuUGCCGgCGUaUCAGCCGc -3'
miRNA:   3'- -CGUu--GUAGUc---ACGGCgGCA-AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 10078 0.66 0.694196
Target:  5'- uGCGAC--CAGaUGCCggguaaGCCGUUCAGCa- -3'
miRNA:   3'- -CGUUGuaGUC-ACGG------CGGCAAGUCGgc -5'
17050 5' -54.4 NC_004333.2 + 35493 0.67 0.683143
Target:  5'- -gAugAUcCAGuUGUCGCUGUUCGGCgCGg -3'
miRNA:   3'- cgUugUA-GUC-ACGGCGGCAAGUCG-GC- -5'
17050 5' -54.4 NC_004333.2 + 16878 0.67 0.683143
Target:  5'- uCGGCGUCggcgcaGGUGCgGCCGgUCucGCCGg -3'
miRNA:   3'- cGUUGUAG------UCACGgCGGCaAGu-CGGC- -5'
17050 5' -54.4 NC_004333.2 + 7726 0.67 0.672039
Target:  5'- aGCGACGgaucguugaUCAG-GCCGuaGUUCucgaGGCCGg -3'
miRNA:   3'- -CGUUGU---------AGUCaCGGCggCAAG----UCGGC- -5'
17050 5' -54.4 NC_004333.2 + 34258 0.67 0.656431
Target:  5'- gGCAGCGgccacgaucgccaCGGcaGCCGCCGcgCAGCCc -3'
miRNA:   3'- -CGUUGUa------------GUCa-CGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 36290 0.67 0.649726
Target:  5'- cGCGACGacaaGGUGCuCGCgccCGUUuCGGCCGa -3'
miRNA:   3'- -CGUUGUag--UCACG-GCG---GCAA-GUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 6219 0.67 0.649726
Target:  5'- gGCGACAcgUCAuGUGCucagCGUCGUUCagguAGCCGc -3'
miRNA:   3'- -CGUUGU--AGU-CACG----GCGGCAAG----UCGGC- -5'
17050 5' -54.4 NC_004333.2 + 33891 0.67 0.649726
Target:  5'- aGCGACAgCGGUGCgguUGCCGUguccaaUCGauuGCCGg -3'
miRNA:   3'- -CGUUGUaGUCACG---GCGGCA------AGU---CGGC- -5'
17050 5' -54.4 NC_004333.2 + 463 0.67 0.63854
Target:  5'- aCGGCGUUuGUGCCGCCGcccgcgauugUCGGCa- -3'
miRNA:   3'- cGUUGUAGuCACGGCGGCa---------AGUCGgc -5'
17050 5' -54.4 NC_004333.2 + 32674 0.68 0.627347
Target:  5'- cGCGcCGcCGGUGaCCGCCGcgagCAGCCc -3'
miRNA:   3'- -CGUuGUaGUCAC-GGCGGCaa--GUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.