miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17050 5' -54.4 NC_004333.2 + 25061 1.12 0.000645
Target:  5'- cGCAACAUCAGUGCCGCCGUUCAGCCGa -3'
miRNA:   3'- -CGUUGUAGUCACGGCGGCAAGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 39189 0.78 0.151224
Target:  5'- cGCcGCGUCGGUcGCCGCCGcgcaCGGCCGc -3'
miRNA:   3'- -CGuUGUAGUCA-CGGCGGCaa--GUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 43322 0.76 0.222005
Target:  5'- aGCGGCAUCGGcacgGCgCGCgCGUacggUCAGCCGa -3'
miRNA:   3'- -CGUUGUAGUCa---CG-GCG-GCA----AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 20884 0.75 0.253443
Target:  5'- cGCAuCAUCGGUuucGCCGgcucguggcgaCCGUUCAGCCa -3'
miRNA:   3'- -CGUuGUAGUCA---CGGC-----------GGCAAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 12400 0.74 0.28845
Target:  5'- gGC-GCGcCAGUGUCGCCGccUUCGGCCa -3'
miRNA:   3'- -CGuUGUaGUCACGGCGGC--AAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 23874 0.74 0.28845
Target:  5'- aCGACGUUcggguucGUGCCGCCGUUCaucgugcggaAGCCGa -3'
miRNA:   3'- cGUUGUAGu------CACGGCGGCAAG----------UCGGC- -5'
17050 5' -54.4 NC_004333.2 + 8413 0.73 0.314358
Target:  5'- aGCAACGUCgccgauacGGUGCCGCCGacguugaucugccCGGCCa -3'
miRNA:   3'- -CGUUGUAG--------UCACGGCGGCaa-----------GUCGGc -5'
17050 5' -54.4 NC_004333.2 + 23365 0.73 0.327146
Target:  5'- -gAGCGUCAccGUGCCGCCcgUCAGuCCGg -3'
miRNA:   3'- cgUUGUAGU--CACGGCGGcaAGUC-GGC- -5'
17050 5' -54.4 NC_004333.2 + 28975 0.73 0.335332
Target:  5'- cGCGGCgAUCAGUugcgcgGCCGCCGggUCGGCg- -3'
miRNA:   3'- -CGUUG-UAGUCA------CGGCGGCa-AGUCGgc -5'
17050 5' -54.4 NC_004333.2 + 3548 0.72 0.36078
Target:  5'- uCAACG-CGGUGCCGCgcagCGcgUCGGCCGa -3'
miRNA:   3'- cGUUGUaGUCACGGCG----GCa-AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 10815 0.72 0.39675
Target:  5'- cGCGACG-CGGUGCaCGUCGcgUAGCCa -3'
miRNA:   3'- -CGUUGUaGUCACG-GCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 6362 0.71 0.41558
Target:  5'- gGCGcCGUC-GUGCCGUCGggCAGCUu -3'
miRNA:   3'- -CGUuGUAGuCACGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 3404 0.71 0.41558
Target:  5'- cGCGACcUCGGUaacggccaagauGCCGCCG-UCGGUCa -3'
miRNA:   3'- -CGUUGuAGUCA------------CGGCGGCaAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 36433 0.7 0.454827
Target:  5'- -gAACGUCGGUGCCGgUCGgcu-GCCGg -3'
miRNA:   3'- cgUUGUAGUCACGGC-GGCaaguCGGC- -5'
17050 5' -54.4 NC_004333.2 + 13538 0.7 0.46495
Target:  5'- cGCGGCGU---UGCCGCCGg-CGGCCa -3'
miRNA:   3'- -CGUUGUAgucACGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 31347 0.7 0.475188
Target:  5'- aGCuuCAUCAGaccGCUGCCGagcgacgCAGCCGc -3'
miRNA:   3'- -CGuuGUAGUCa--CGGCGGCaa-----GUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 34628 0.7 0.485538
Target:  5'- cCGACAUUuuguGUGCCGCCGUUU--CCGc -3'
miRNA:   3'- cGUUGUAGu---CACGGCGGCAAGucGGC- -5'
17050 5' -54.4 NC_004333.2 + 37068 0.69 0.517201
Target:  5'- gGCGAUuUC-GUGCCGCUGUUC-GUCGc -3'
miRNA:   3'- -CGUUGuAGuCACGGCGGCAAGuCGGC- -5'
17050 5' -54.4 NC_004333.2 + 38545 0.69 0.527941
Target:  5'- -gGGCG-CAGgcgcGCCGCCGg-CAGCCGg -3'
miRNA:   3'- cgUUGUaGUCa---CGGCGGCaaGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 41321 0.69 0.527941
Target:  5'- cGCAAUG-CAGUgcgcaGCCGCCGg-UAGCCGa -3'
miRNA:   3'- -CGUUGUaGUCA-----CGGCGGCaaGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.