miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17050 5' -54.4 NC_004333.2 + 463 0.67 0.63854
Target:  5'- aCGGCGUUuGUGCCGCCGcccgcgauugUCGGCa- -3'
miRNA:   3'- cGUUGUAGuCACGGCGGCa---------AGUCGgc -5'
17050 5' -54.4 NC_004333.2 + 1081 0.68 0.582718
Target:  5'- gGCGACAuucaUCAcGUGCCGCaaGUUCAcGUCGc -3'
miRNA:   3'- -CGUUGU----AGU-CACGGCGg-CAAGU-CGGC- -5'
17050 5' -54.4 NC_004333.2 + 1833 0.68 0.616159
Target:  5'- cGCAGCGgcgcauaaCGGcGcCCGCuCGUUCAGUCGa -3'
miRNA:   3'- -CGUUGUa-------GUCaC-GGCG-GCAAGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 2637 0.66 0.694196
Target:  5'- cGCGguuCAUCGcgcuUGCCGgCGUaUCAGCCGc -3'
miRNA:   3'- -CGUu--GUAGUc---ACGGCgGCA-AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 2684 0.68 0.582718
Target:  5'- uGCAGCGUCGc-GCCGgCGg-CGGCCGa -3'
miRNA:   3'- -CGUUGUAGUcaCGGCgGCaaGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 2713 0.66 0.716104
Target:  5'- gGCGGCA--GGUGgaCGCCGUagUUGGCCGc -3'
miRNA:   3'- -CGUUGUagUCACg-GCGGCA--AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 2920 0.68 0.582718
Target:  5'- cGCAGCggucgugaccGUCAacGUGCCGCUGUagcccugCAGCUGc -3'
miRNA:   3'- -CGUUG----------UAGU--CACGGCGGCAa------GUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 3404 0.71 0.41558
Target:  5'- cGCGACcUCGGUaacggccaagauGCCGCCG-UCGGUCa -3'
miRNA:   3'- -CGUUGuAGUCA------------CGGCGGCaAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 3548 0.72 0.36078
Target:  5'- uCAACG-CGGUGCCGCgcagCGcgUCGGCCGa -3'
miRNA:   3'- cGUUGUaGUCACGGCG----GCa-AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 5589 0.66 0.726936
Target:  5'- uGCGGcCAUCGG-GCaugCGCaCGUUCAGgCCGu -3'
miRNA:   3'- -CGUU-GUAGUCaCG---GCG-GCAAGUC-GGC- -5'
17050 5' -54.4 NC_004333.2 + 6219 0.67 0.649726
Target:  5'- gGCGACAcgUCAuGUGCucagCGUCGUUCagguAGCCGc -3'
miRNA:   3'- -CGUUGU--AGU-CACG----GCGGCAAG----UCGGC- -5'
17050 5' -54.4 NC_004333.2 + 6362 0.71 0.41558
Target:  5'- gGCGcCGUC-GUGCCGUCGggCAGCUu -3'
miRNA:   3'- -CGUuGUAGuCACGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 7726 0.67 0.672039
Target:  5'- aGCGACGgaucguugaUCAG-GCCGuaGUUCucgaGGCCGg -3'
miRNA:   3'- -CGUUGU---------AGUCaCGGCggCAAG----UCGGC- -5'
17050 5' -54.4 NC_004333.2 + 8413 0.73 0.314358
Target:  5'- aGCAACGUCgccgauacGGUGCCGCCGacguugaucugccCGGCCa -3'
miRNA:   3'- -CGUUGUAG--------UCACGGCGGCaa-----------GUCGGc -5'
17050 5' -54.4 NC_004333.2 + 8560 0.66 0.726936
Target:  5'- gGCuGgAUC-GUGuuGCCGaaUUCAGCCa -3'
miRNA:   3'- -CGuUgUAGuCACggCGGC--AAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 8669 0.68 0.593835
Target:  5'- uCGugA-CGGUGCCGUcggCGUUCAGCaCGg -3'
miRNA:   3'- cGUugUaGUCACGGCG---GCAAGUCG-GC- -5'
17050 5' -54.4 NC_004333.2 + 10078 0.66 0.694196
Target:  5'- uGCGAC--CAGaUGCCggguaaGCCGUUCAGCa- -3'
miRNA:   3'- -CGUUGuaGUC-ACGG------CGGCAAGUCGgc -5'
17050 5' -54.4 NC_004333.2 + 10815 0.72 0.39675
Target:  5'- cGCGACG-CGGUGCaCGUCGcgUAGCCa -3'
miRNA:   3'- -CGUUGUaGUCACG-GCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 11853 0.66 0.737669
Target:  5'- cGguACAUCGcuuccGU-CUGCCGgUCGGCCGa -3'
miRNA:   3'- -CguUGUAGU-----CAcGGCGGCaAGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 12400 0.74 0.28845
Target:  5'- gGC-GCGcCAGUGUCGCCGccUUCGGCCa -3'
miRNA:   3'- -CGuUGUaGUCACGGCGGC--AAGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.