Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17050 | 5' | -54.4 | NC_004333.2 | + | 12400 | 0.74 | 0.28845 |
Target: 5'- gGC-GCGcCAGUGUCGCCGccUUCGGCCa -3' miRNA: 3'- -CGuUGUaGUCACGGCGGC--AAGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 26830 | 0.66 | 0.694196 |
Target: 5'- uGCAGCGUCguagcgAGUGCUGUCGcgUCGcGCuCGg -3' miRNA: 3'- -CGUUGUAG------UCACGGCGGCa-AGU-CG-GC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 2637 | 0.66 | 0.694196 |
Target: 5'- cGCGguuCAUCGcgcuUGCCGgCGUaUCAGCCGc -3' miRNA: 3'- -CGUu--GUAGUc---ACGGCgGCA-AGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 11853 | 0.66 | 0.737669 |
Target: 5'- cGguACAUCGcuuccGU-CUGCCGgUCGGCCGa -3' miRNA: 3'- -CguUGUAGU-----CAcGGCGGCaAGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 28975 | 0.73 | 0.335332 |
Target: 5'- cGCGGCgAUCAGUugcgcgGCCGCCGggUCGGCg- -3' miRNA: 3'- -CGUUG-UAGUCA------CGGCGGCa-AGUCGgc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 3548 | 0.72 | 0.36078 |
Target: 5'- uCAACG-CGGUGCCGCgcagCGcgUCGGCCGa -3' miRNA: 3'- cGUUGUaGUCACGGCG----GCa-AGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 31347 | 0.7 | 0.475188 |
Target: 5'- aGCuuCAUCAGaccGCUGCCGagcgacgCAGCCGc -3' miRNA: 3'- -CGuuGUAGUCa--CGGCGGCaa-----GUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 34628 | 0.7 | 0.485538 |
Target: 5'- cCGACAUUuuguGUGCCGCCGUUU--CCGc -3' miRNA: 3'- cGUUGUAGu---CACGGCGGCAAGucGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 2684 | 0.68 | 0.582718 |
Target: 5'- uGCAGCGUCGc-GCCGgCGg-CGGCCGa -3' miRNA: 3'- -CGUUGUAGUcaCGGCgGCaaGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 7726 | 0.67 | 0.672039 |
Target: 5'- aGCGACGgaucguugaUCAG-GCCGuaGUUCucgaGGCCGg -3' miRNA: 3'- -CGUUGU---------AGUCaCGGCggCAAG----UCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 25418 | 0.68 | 0.593835 |
Target: 5'- uGCAGCGUgcCGGcgGCgGCCG-UCAcGCCGg -3' miRNA: 3'- -CGUUGUA--GUCa-CGgCGGCaAGU-CGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 2920 | 0.68 | 0.582718 |
Target: 5'- cGCAGCggucgugaccGUCAacGUGCCGCUGUagcccugCAGCUGc -3' miRNA: 3'- -CGUUG----------UAGU--CACGGCGGCAa------GUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 23874 | 0.74 | 0.28845 |
Target: 5'- aCGACGUUcggguucGUGCCGCCGUUCaucgugcggaAGCCGa -3' miRNA: 3'- cGUUGUAGu------CACGGCGGCAAG----------UCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 463 | 0.67 | 0.63854 |
Target: 5'- aCGGCGUUuGUGCCGCCGcccgcgauugUCGGCa- -3' miRNA: 3'- cGUUGUAGuCACGGCGGCa---------AGUCGgc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 8413 | 0.73 | 0.314358 |
Target: 5'- aGCAACGUCgccgauacGGUGCCGCCGacguugaucugccCGGCCa -3' miRNA: 3'- -CGUUGUAG--------UCACGGCGGCaa-----------GUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 1081 | 0.68 | 0.582718 |
Target: 5'- gGCGACAuucaUCAcGUGCCGCaaGUUCAcGUCGc -3' miRNA: 3'- -CGUUGU----AGU-CACGGCGg-CAAGU-CGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 33891 | 0.67 | 0.649726 |
Target: 5'- aGCGACAgCGGUGCgguUGCCGUguccaaUCGauuGCCGg -3' miRNA: 3'- -CGUUGUaGUCACG---GCGGCA------AGU---CGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 34814 | 0.66 | 0.694196 |
Target: 5'- aUAGCAUCgaaGGUGcCCGCCag-CAGUCGa -3' miRNA: 3'- cGUUGUAG---UCAC-GGCGGcaaGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 23365 | 0.73 | 0.327146 |
Target: 5'- -gAGCGUCAccGUGCCGCCcgUCAGuCCGg -3' miRNA: 3'- cgUUGUAGU--CACGGCGGcaAGUC-GGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 13538 | 0.7 | 0.46495 |
Target: 5'- cGCGGCGU---UGCCGCCGg-CGGCCa -3' miRNA: 3'- -CGUUGUAgucACGGCGGCaaGUCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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