Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17050 | 5' | -54.4 | NC_004333.2 | + | 42650 | 0.66 | 0.705187 |
Target: 5'- cGCAGCGUCuc--CCGUCGagCAGCCc -3' miRNA: 3'- -CGUUGUAGucacGGCGGCaaGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 8560 | 0.66 | 0.726936 |
Target: 5'- gGCuGgAUC-GUGuuGCCGaaUUCAGCCa -3' miRNA: 3'- -CGuUgUAGuCACggCGGC--AAGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 5589 | 0.66 | 0.726936 |
Target: 5'- uGCGGcCAUCGG-GCaugCGCaCGUUCAGgCCGu -3' miRNA: 3'- -CGUU-GUAGUCaCG---GCG-GCAAGUC-GGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 11853 | 0.66 | 0.737669 |
Target: 5'- cGguACAUCGcuuccGU-CUGCCGgUCGGCCGa -3' miRNA: 3'- -CguUGUAGU-----CAcGGCGGCaAGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 463 | 0.67 | 0.63854 |
Target: 5'- aCGGCGUUuGUGCCGCCGcccgcgauugUCGGCa- -3' miRNA: 3'- cGUUGUAGuCACGGCGGCa---------AGUCGgc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 36290 | 0.67 | 0.649726 |
Target: 5'- cGCGACGacaaGGUGCuCGCgccCGUUuCGGCCGa -3' miRNA: 3'- -CGUUGUag--UCACG-GCG---GCAA-GUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 34258 | 0.67 | 0.656431 |
Target: 5'- gGCAGCGgccacgaucgccaCGGcaGCCGCCGcgCAGCCc -3' miRNA: 3'- -CGUUGUa------------GUCa-CGGCGGCaaGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 35493 | 0.67 | 0.683143 |
Target: 5'- -gAugAUcCAGuUGUCGCUGUUCGGCgCGg -3' miRNA: 3'- cgUugUA-GUC-ACGGCGGCAAGUCG-GC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 10078 | 0.66 | 0.694196 |
Target: 5'- uGCGAC--CAGaUGCCggguaaGCCGUUCAGCa- -3' miRNA: 3'- -CGUUGuaGUC-ACGG------CGGCAAGUCGgc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 32674 | 0.68 | 0.627347 |
Target: 5'- cGCGcCGcCGGUGaCCGCCGcgagCAGCCc -3' miRNA: 3'- -CGUuGUaGUCAC-GGCGGCaa--GUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 1833 | 0.68 | 0.616159 |
Target: 5'- cGCAGCGgcgcauaaCGGcGcCCGCuCGUUCAGUCGa -3' miRNA: 3'- -CGUUGUa-------GUCaC-GGCG-GCAAGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 41321 | 0.69 | 0.527941 |
Target: 5'- cGCAAUG-CAGUgcgcaGCCGCCGg-UAGCCGa -3' miRNA: 3'- -CGUUGUaGUCA-----CGGCGGCaaGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 43322 | 0.76 | 0.222005 |
Target: 5'- aGCGGCAUCGGcacgGCgCGCgCGUacggUCAGCCGa -3' miRNA: 3'- -CGUUGUAGUCa---CG-GCG-GCA----AGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 20884 | 0.75 | 0.253443 |
Target: 5'- cGCAuCAUCGGUuucGCCGgcucguggcgaCCGUUCAGCCa -3' miRNA: 3'- -CGUuGUAGUCA---CGGC-----------GGCAAGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 10815 | 0.72 | 0.39675 |
Target: 5'- cGCGACG-CGGUGCaCGUCGcgUAGCCa -3' miRNA: 3'- -CGUUGUaGUCACG-GCGGCaaGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 3404 | 0.71 | 0.41558 |
Target: 5'- cGCGACcUCGGUaacggccaagauGCCGCCG-UCGGUCa -3' miRNA: 3'- -CGUUGuAGUCA------------CGGCGGCaAGUCGGc -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 25061 | 1.12 | 0.000645 |
Target: 5'- cGCAACAUCAGUGCCGCCGUUCAGCCGa -3' miRNA: 3'- -CGUUGUAGUCACGGCGGCAAGUCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 36433 | 0.7 | 0.454827 |
Target: 5'- -gAACGUCGGUGCCGgUCGgcu-GCCGg -3' miRNA: 3'- cgUUGUAGUCACGGC-GGCaaguCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 37068 | 0.69 | 0.517201 |
Target: 5'- gGCGAUuUC-GUGCCGCUGUUC-GUCGc -3' miRNA: 3'- -CGUUGuAGuCACGGCGGCAAGuCGGC- -5' |
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17050 | 5' | -54.4 | NC_004333.2 | + | 38545 | 0.69 | 0.527941 |
Target: 5'- -gGGCG-CAGgcgcGCCGCCGg-CAGCCGg -3' miRNA: 3'- cgUUGUaGUCa---CGGCGGCaaGUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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