miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17050 5' -54.4 NC_004333.2 + 25061 1.12 0.000645
Target:  5'- cGCAACAUCAGUGCCGCCGUUCAGCCGa -3'
miRNA:   3'- -CGUUGUAGUCACGGCGGCAAGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 37068 0.69 0.517201
Target:  5'- gGCGAUuUC-GUGCCGCUGUUC-GUCGc -3'
miRNA:   3'- -CGUUGuAGuCACGGCGGCAAGuCGGC- -5'
17050 5' -54.4 NC_004333.2 + 36433 0.7 0.454827
Target:  5'- -gAACGUCGGUGCCGgUCGgcu-GCCGg -3'
miRNA:   3'- cgUUGUAGUCACGGC-GGCaaguCGGC- -5'
17050 5' -54.4 NC_004333.2 + 3404 0.71 0.41558
Target:  5'- cGCGACcUCGGUaacggccaagauGCCGCCG-UCGGUCa -3'
miRNA:   3'- -CGUUGuAGUCA------------CGGCGGCaAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 6362 0.71 0.41558
Target:  5'- gGCGcCGUC-GUGCCGUCGggCAGCUu -3'
miRNA:   3'- -CGUuGUAGuCACGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 10815 0.72 0.39675
Target:  5'- cGCGACG-CGGUGCaCGUCGcgUAGCCa -3'
miRNA:   3'- -CGUUGUaGUCACG-GCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 20884 0.75 0.253443
Target:  5'- cGCAuCAUCGGUuucGCCGgcucguggcgaCCGUUCAGCCa -3'
miRNA:   3'- -CGUuGUAGUCA---CGGC-----------GGCAAGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 43322 0.76 0.222005
Target:  5'- aGCGGCAUCGGcacgGCgCGCgCGUacggUCAGCCGa -3'
miRNA:   3'- -CGUUGUAGUCa---CG-GCG-GCA----AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 39189 0.78 0.151224
Target:  5'- cGCcGCGUCGGUcGCCGCCGcgcaCGGCCGc -3'
miRNA:   3'- -CGuUGUAGUCA-CGGCGGCaa--GUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 38545 0.69 0.527941
Target:  5'- -gGGCG-CAGgcgcGCCGCCGg-CAGCCGg -3'
miRNA:   3'- cgUUGUaGUCa---CGGCGGCaaGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 41321 0.69 0.527941
Target:  5'- cGCAAUG-CAGUgcgcaGCCGCCGg-UAGCCGa -3'
miRNA:   3'- -CGUUGUaGUCA-----CGGCGGCaaGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 1833 0.68 0.616159
Target:  5'- cGCAGCGgcgcauaaCGGcGcCCGCuCGUUCAGUCGa -3'
miRNA:   3'- -CGUUGUa-------GUCaC-GGCG-GCAAGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 2713 0.66 0.716104
Target:  5'- gGCGGCA--GGUGgaCGCCGUagUUGGCCGc -3'
miRNA:   3'- -CGUUGUagUCACg-GCGGCA--AGUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 10078 0.66 0.694196
Target:  5'- uGCGAC--CAGaUGCCggguaaGCCGUUCAGCa- -3'
miRNA:   3'- -CGUUGuaGUC-ACGG------CGGCAAGUCGgc -5'
17050 5' -54.4 NC_004333.2 + 16878 0.67 0.683143
Target:  5'- uCGGCGUCggcgcaGGUGCgGCCGgUCucGCCGg -3'
miRNA:   3'- cGUUGUAG------UCACGgCGGCaAGu-CGGC- -5'
17050 5' -54.4 NC_004333.2 + 35493 0.67 0.683143
Target:  5'- -gAugAUcCAGuUGUCGCUGUUCGGCgCGg -3'
miRNA:   3'- cgUugUA-GUC-ACGGCGGCAAGUCG-GC- -5'
17050 5' -54.4 NC_004333.2 + 34258 0.67 0.656431
Target:  5'- gGCAGCGgccacgaucgccaCGGcaGCCGCCGcgCAGCCc -3'
miRNA:   3'- -CGUUGUa------------GUCa-CGGCGGCaaGUCGGc -5'
17050 5' -54.4 NC_004333.2 + 36290 0.67 0.649726
Target:  5'- cGCGACGacaaGGUGCuCGCgccCGUUuCGGCCGa -3'
miRNA:   3'- -CGUUGUag--UCACG-GCG---GCAA-GUCGGC- -5'
17050 5' -54.4 NC_004333.2 + 6219 0.67 0.649726
Target:  5'- gGCGACAcgUCAuGUGCucagCGUCGUUCagguAGCCGc -3'
miRNA:   3'- -CGUUGU--AGU-CACG----GCGGCAAG----UCGGC- -5'
17050 5' -54.4 NC_004333.2 + 32674 0.68 0.627347
Target:  5'- cGCGcCGcCGGUGaCCGCCGcgagCAGCCc -3'
miRNA:   3'- -CGUuGUaGUCAC-GGCGGCaa--GUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.