Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 24892 | 1.14 | 0.000474 |
Target: 5'- cGCUUACACUGGUCGUGCCGACCUGGCu -3' miRNA: 3'- -CGAAUGUGACCAGCACGGCUGGACCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 26441 | 0.76 | 0.208486 |
Target: 5'- ---aAUugUGcGgCGUGCCGACCUGGCc -3' miRNA: 3'- cgaaUGugAC-CaGCACGGCUGGACCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 676 | 0.76 | 0.231937 |
Target: 5'- ----gUACUGGUCGcGCCGGCC-GGCg -3' miRNA: 3'- cgaauGUGACCAGCaCGGCUGGaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 38036 | 0.74 | 0.285478 |
Target: 5'- cGCgguCGCgaagUGGUCGgcuaUGCCGACCUGGg -3' miRNA: 3'- -CGaauGUG----ACCAGC----ACGGCUGGACCg -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 43897 | 0.72 | 0.365484 |
Target: 5'- aGCcggGCACgauGUUGUGUCGACCgGGCg -3' miRNA: 3'- -CGaa-UGUGac-CAGCACGGCUGGaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 40338 | 0.71 | 0.459681 |
Target: 5'- gGCcgGCGCaGGcCGcGUCGAUCUGGCg -3' miRNA: 3'- -CGaaUGUGaCCaGCaCGGCUGGACCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 11321 | 0.7 | 0.480035 |
Target: 5'- -gUUGCACUGGUCGcGCgCGAUgaaGGCg -3' miRNA: 3'- cgAAUGUGACCAGCaCG-GCUGga-CCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 45389 | 0.7 | 0.480035 |
Target: 5'- ---aGCGCcaGGUCGgcaagGCCgcaGACCUGGCa -3' miRNA: 3'- cgaaUGUGa-CCAGCa----CGG---CUGGACCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 39684 | 0.69 | 0.521989 |
Target: 5'- cGCUU-C-CUGGUCG-GCCuGCCUGcGCc -3' miRNA: 3'- -CGAAuGuGACCAGCaCGGcUGGAC-CG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 2780 | 0.69 | 0.532704 |
Target: 5'- --gUGC-CaGGUCugcggccuUGCCGACCUGGCg -3' miRNA: 3'- cgaAUGuGaCCAGc-------ACGGCUGGACCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 20329 | 0.69 | 0.554361 |
Target: 5'- gGCUUGC-C-GGcCGUGCCGACg-GGUa -3' miRNA: 3'- -CGAAUGuGaCCaGCACGGCUGgaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 45876 | 0.68 | 0.57627 |
Target: 5'- ---aACGCgGG-CGUGCCGGCCacGGUa -3' miRNA: 3'- cgaaUGUGaCCaGCACGGCUGGa-CCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 35782 | 0.68 | 0.5873 |
Target: 5'- gGCggcgACACUGG-CGcGCCGGgCggGGCg -3' miRNA: 3'- -CGaa--UGUGACCaGCaCGGCUgGa-CCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 17561 | 0.68 | 0.598368 |
Target: 5'- cGCUgcUGCACgaccUGG-CGU-CCGGCCUGGg -3' miRNA: 3'- -CGA--AUGUG----ACCaGCAcGGCUGGACCg -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 48058 | 0.68 | 0.620582 |
Target: 5'- uGCUcaUGCGCgauGUCGUgcugcucgguGCCGACgaGGCg -3' miRNA: 3'- -CGA--AUGUGac-CAGCA----------CGGCUGgaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 45402 | 0.68 | 0.631709 |
Target: 5'- cGCUU-CAC-GGUCGUGacgaacgCGACC-GGCa -3' miRNA: 3'- -CGAAuGUGaCCAGCACg------GCUGGaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 19152 | 0.67 | 0.665052 |
Target: 5'- uGCUcGCGCUGGuuaUCGUGCUaGCCgcgcGCg -3' miRNA: 3'- -CGAaUGUGACC---AGCACGGcUGGac--CG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 37681 | 0.67 | 0.665052 |
Target: 5'- ----cCGCUcGUCG-GCCGGCCcGGCg -3' miRNA: 3'- cgaauGUGAcCAGCaCGGCUGGaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 11992 | 0.67 | 0.687141 |
Target: 5'- gGCUUGCGCccaaucUCGUGCuCGugCaGGCg -3' miRNA: 3'- -CGAAUGUGacc---AGCACG-GCugGaCCG- -5' |
|||||||
17051 | 3' | -54.5 | NC_004333.2 | + | 9288 | 0.66 | 0.709015 |
Target: 5'- gGCUU-CAC-GGUCGgguuuucaccGCCGGCCgGGUu -3' miRNA: 3'- -CGAAuGUGaCCAGCa---------CGGCUGGaCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home