Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17051 | 3' | -54.5 | NC_004333.2 | + | 40338 | 0.71 | 0.459681 |
|
Target: 5'- gGCcgGCGCaGGcCGcGUCGAUCUGGCg -3' miRNA: 3'- -CGaaUGUGaCCaGCaCGGCUGGACCG- -5' |
|||||||
| 17051 | 3' | -54.5 | NC_004333.2 | + | 43897 | 0.72 | 0.365484 |
|
Target: 5'- aGCcggGCACgauGUUGUGUCGACCgGGCg -3' miRNA: 3'- -CGaa-UGUGac-CAGCACGGCUGGaCCG- -5' |
|||||||
| 17051 | 3' | -54.5 | NC_004333.2 | + | 38036 | 0.74 | 0.285478 |
|
Target: 5'- cGCgguCGCgaagUGGUCGgcuaUGCCGACCUGGg -3' miRNA: 3'- -CGaauGUG----ACCAGC----ACGGCUGGACCg -5' |
|||||||
| 17051 | 3' | -54.5 | NC_004333.2 | + | 676 | 0.76 | 0.231937 |
|
Target: 5'- ----gUACUGGUCGcGCCGGCC-GGCg -3' miRNA: 3'- cgaauGUGACCAGCaCGGCUGGaCCG- -5' |
|||||||
| 17051 | 3' | -54.5 | NC_004333.2 | + | 26441 | 0.76 | 0.208486 |
|
Target: 5'- ---aAUugUGcGgCGUGCCGACCUGGCc -3' miRNA: 3'- cgaaUGugAC-CaGCACGGCUGGACCG- -5' |
|||||||
| 17051 | 3' | -54.5 | NC_004333.2 | + | 24892 | 1.14 | 0.000474 |
|
Target: 5'- cGCUUACACUGGUCGUGCCGACCUGGCu -3' miRNA: 3'- -CGAAUGUGACCAGCACGGCUGGACCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home