miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17051 5' -55.4 NC_004333.2 + 23173 0.66 0.732495
Target:  5'- -cGUgGCGAuCAGCGUGACaggCGGCGCGg -3'
miRNA:   3'- gcCAgUGCUuGUUGUGCUG---GCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 47194 0.66 0.732495
Target:  5'- gCGcagCACGAggcACAAgucgcCGCGACgGGCGCGc -3'
miRNA:   3'- -GCca-GUGCU---UGUU-----GUGCUGgCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 31059 0.66 0.732495
Target:  5'- uGGauauUCAcgcCGAACGACGCGAgcgccugcagguUCGGCGCc -3'
miRNA:   3'- gCC----AGU---GCUUGUUGUGCU------------GGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 17217 0.66 0.732495
Target:  5'- gGaGUCGCGcuuGACGGC-CG-CCGGCGUa -3'
miRNA:   3'- gC-CAGUGC---UUGUUGuGCuGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 19403 0.66 0.732495
Target:  5'- -aGUCGCGc-CGcCGCGACCcGCGCGg -3'
miRNA:   3'- gcCAGUGCuuGUuGUGCUGGcCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 33768 0.66 0.732495
Target:  5'- gCGG-CGCGAGaaacucgccuuCAugGCGACC-GCGCa -3'
miRNA:   3'- -GCCaGUGCUU-----------GUugUGCUGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 10168 0.66 0.731446
Target:  5'- gGGUCGgcgcacuggaagcCGAGCGACGCGGgCaGUGCu -3'
miRNA:   3'- gCCAGU-------------GCUUGUUGUGCUgGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 11815 0.66 0.721963
Target:  5'- ---aCGCGGccauCAGCGCGA-CGGCGCGc -3'
miRNA:   3'- gccaGUGCUu---GUUGUGCUgGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 2864 0.66 0.721963
Target:  5'- gCGGcguUCGCGAACGACGuCGcAgCGGCGa- -3'
miRNA:   3'- -GCC---AGUGCUUGUUGU-GC-UgGCCGCgc -5'
17051 5' -55.4 NC_004333.2 + 47992 0.66 0.721963
Target:  5'- gCGGgcgCACGGGCAGuggacuCGCG-CCaGGCGCc -3'
miRNA:   3'- -GCCa--GUGCUUGUU------GUGCuGG-CCGCGc -5'
17051 5' -55.4 NC_004333.2 + 1446 0.66 0.721963
Target:  5'- uCGGUCAguucggugaucgUGAACuGguCGACCGGCaGCu -3'
miRNA:   3'- -GCCAGU------------GCUUGuUguGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 13656 0.66 0.711342
Target:  5'- uCGGgcagcugCGCGAGCAGCACGAgCGuaGg- -3'
miRNA:   3'- -GCCa------GUGCUUGUUGUGCUgGCcgCgc -5'
17051 5' -55.4 NC_004333.2 + 22173 0.66 0.711342
Target:  5'- -uGUCGCcGGCG--GCGGCCGGCgGCGg -3'
miRNA:   3'- gcCAGUGcUUGUugUGCUGGCCG-CGC- -5'
17051 5' -55.4 NC_004333.2 + 28619 0.66 0.711342
Target:  5'- uGuGcCGCGccGACcgUGCGACCGGCGCc -3'
miRNA:   3'- gC-CaGUGC--UUGuuGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 40211 0.66 0.700645
Target:  5'- uGGcacgcugUACGAagugcGCGACGCGGCCGGC-Ca -3'
miRNA:   3'- gCCa------GUGCU-----UGUUGUGCUGGCCGcGc -5'
17051 5' -55.4 NC_004333.2 + 29952 0.66 0.700645
Target:  5'- ---gCGCGAAaAGCGCGuGCCGaGCGCGg -3'
miRNA:   3'- gccaGUGCUUgUUGUGC-UGGC-CGCGC- -5'
17051 5' -55.4 NC_004333.2 + 37178 0.66 0.700645
Target:  5'- gCGGcgaCACGccgcucACGACGCGcGCCGGUGCc -3'
miRNA:   3'- -GCCa--GUGCu-----UGUUGUGC-UGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 29094 0.66 0.700645
Target:  5'- aCGGUCacACGGGCcGCGcCGAgUGGCGaCGu -3'
miRNA:   3'- -GCCAG--UGCUUGuUGU-GCUgGCCGC-GC- -5'
17051 5' -55.4 NC_004333.2 + 13897 0.66 0.700645
Target:  5'- cCGG-CACGGGCuGCGCGG-CGGCuGCc -3'
miRNA:   3'- -GCCaGUGCUUGuUGUGCUgGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 20141 0.66 0.689883
Target:  5'- cCGaUCACGAGCGACACGAUCaGUa-- -3'
miRNA:   3'- -GCcAGUGCUUGUUGUGCUGGcCGcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.