miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17051 5' -55.4 NC_004333.2 + 23173 0.66 0.732495
Target:  5'- -cGUgGCGAuCAGCGUGACaggCGGCGCGg -3'
miRNA:   3'- gcCAgUGCUuGUUGUGCUG---GCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 33262 0.66 0.688803
Target:  5'- gCGGUCGuccaGGACGGCuuggaaaacugguACGACuCGGUGCu -3'
miRNA:   3'- -GCCAGUg---CUUGUUG-------------UGCUG-GCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 15399 0.66 0.679065
Target:  5'- cCGGUCGCaauGCAAggugccgcgcuUAUGGCCGGCgGCa -3'
miRNA:   3'- -GCCAGUGcu-UGUU-----------GUGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 58 0.66 0.679065
Target:  5'- aCGGUCAC------CAUG-CCGGCGCGg -3'
miRNA:   3'- -GCCAGUGcuuguuGUGCuGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 47934 0.66 0.679065
Target:  5'- ---aCAuCGAACGGCACGGCgUGGgGCGa -3'
miRNA:   3'- gccaGU-GCUUGUUGUGCUG-GCCgCGC- -5'
17051 5' -55.4 NC_004333.2 + 10971 0.66 0.679065
Target:  5'- aGcGUCGCGcGgAACuCGgcACCGGCGCGc -3'
miRNA:   3'- gC-CAGUGCuUgUUGuGC--UGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 4145 0.66 0.679065
Target:  5'- aCGGUCAgGAaugaguucguguACAGCGCG-CC-GCGCu -3'
miRNA:   3'- -GCCAGUgCU------------UGUUGUGCuGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 19228 0.66 0.679065
Target:  5'- aCGGcgCuCGAGCAAUACgGGCUGGaCGUGa -3'
miRNA:   3'- -GCCa-GuGCUUGUUGUG-CUGGCC-GCGC- -5'
17051 5' -55.4 NC_004333.2 + 19558 0.66 0.679065
Target:  5'- cCGGUCgcACGGuCGGCGCGGCacaaggggaauCGcGCGCGa -3'
miRNA:   3'- -GCCAG--UGCUuGUUGUGCUG-----------GC-CGCGC- -5'
17051 5' -55.4 NC_004333.2 + 20141 0.66 0.689883
Target:  5'- cCGaUCACGAGCGACACGAUCaGUa-- -3'
miRNA:   3'- -GCcAGUGCUUGUUGUGCUGGcCGcgc -5'
17051 5' -55.4 NC_004333.2 + 30638 0.66 0.689883
Target:  5'- uCGGggaugugCGCGAucgcuucggACAGUGCGACCGGCuGCa -3'
miRNA:   3'- -GCCa------GUGCU---------UGUUGUGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 45176 0.66 0.689883
Target:  5'- -cGUCGCGGcgGACGCG-CCGGCGa- -3'
miRNA:   3'- gcCAGUGCUugUUGUGCuGGCCGCgc -5'
17051 5' -55.4 NC_004333.2 + 19403 0.66 0.732495
Target:  5'- -aGUCGCGc-CGcCGCGACCcGCGCGg -3'
miRNA:   3'- gcCAGUGCuuGUuGUGCUGGcCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 33768 0.66 0.732495
Target:  5'- gCGG-CGCGAGaaacucgccuuCAugGCGACC-GCGCa -3'
miRNA:   3'- -GCCaGUGCUU-----------GUugUGCUGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 17217 0.66 0.732495
Target:  5'- gGaGUCGCGcuuGACGGC-CG-CCGGCGUa -3'
miRNA:   3'- gC-CAGUGC---UUGUUGuGCuGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 10168 0.66 0.731446
Target:  5'- gGGUCGgcgcacuggaagcCGAGCGACGCGGgCaGUGCu -3'
miRNA:   3'- gCCAGU-------------GCUUGUUGUGCUgGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 1446 0.66 0.721963
Target:  5'- uCGGUCAguucggugaucgUGAACuGguCGACCGGCaGCu -3'
miRNA:   3'- -GCCAGU------------GCUUGuUguGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 47992 0.66 0.721963
Target:  5'- gCGGgcgCACGGGCAGuggacuCGCG-CCaGGCGCc -3'
miRNA:   3'- -GCCa--GUGCUUGUU------GUGCuGG-CCGCGc -5'
17051 5' -55.4 NC_004333.2 + 28619 0.66 0.711342
Target:  5'- uGuGcCGCGccGACcgUGCGACCGGCGCc -3'
miRNA:   3'- gC-CaGUGC--UUGuuGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 29094 0.66 0.700645
Target:  5'- aCGGUCacACGGGCcGCGcCGAgUGGCGaCGu -3'
miRNA:   3'- -GCCAG--UGCUUGuUGU-GCUgGCCGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.