miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17051 5' -55.4 NC_004333.2 + 24930 0.96 0.008391
Target:  5'- aCGGUCACGAACAACACGACCG-CGCGu -3'
miRNA:   3'- -GCCAGUGCUUGUUGUGCUGGCcGCGC- -5'
17051 5' -55.4 NC_004333.2 + 155 0.82 0.084415
Target:  5'- uCGG-CGCGAGC-ACACGAUCGGCGCc -3'
miRNA:   3'- -GCCaGUGCUUGuUGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 27838 0.8 0.118376
Target:  5'- cCGGUCGCGGuacccguCGGCACGGCCGGCa-- -3'
miRNA:   3'- -GCCAGUGCUu------GUUGUGCUGGCCGcgc -5'
17051 5' -55.4 NC_004333.2 + 15187 0.8 0.121721
Target:  5'- aGGUCGCGuucGCAauccGCACGGCCGGCaGCa -3'
miRNA:   3'- gCCAGUGCu--UGU----UGUGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 30121 0.78 0.159868
Target:  5'- aGGUCggacugcgcagcaGCGGGCAGCGCGAUCaGCGCGu -3'
miRNA:   3'- gCCAG-------------UGCUUGUUGUGCUGGcCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 13356 0.77 0.169242
Target:  5'- aCGGUgUACGGgcGCGGCACGAgCGGCGUGu -3'
miRNA:   3'- -GCCA-GUGCU--UGUUGUGCUgGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 30625 0.77 0.178623
Target:  5'- aGGUCGUGcAGCAGCGCGGCaaGGCGCGg -3'
miRNA:   3'- gCCAGUGC-UUGUUGUGCUGg-CCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 45408 0.77 0.178623
Target:  5'- aCGGUCGUGAcgAACGCGACCGGCacgGCGg -3'
miRNA:   3'- -GCCAGUGCUugUUGUGCUGGCCG---CGC- -5'
17051 5' -55.4 NC_004333.2 + 32322 0.77 0.188463
Target:  5'- uCGGUCACGAGCGcguGCACGgcuGCCGGguCGCu -3'
miRNA:   3'- -GCCAGUGCUUGU---UGUGC---UGGCC--GCGc -5'
17051 5' -55.4 NC_004333.2 + 41722 0.77 0.19356
Target:  5'- aCGG-CGCGAuCAACGaggaGAUCGGCGCGg -3'
miRNA:   3'- -GCCaGUGCUuGUUGUg---CUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 36121 0.77 0.19356
Target:  5'- aGGUUgGCGAcgGCcuGCGCGACCGGCGCa -3'
miRNA:   3'- gCCAG-UGCU--UGu-UGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 27772 0.77 0.19356
Target:  5'- gCGGUgACGAGCGGCGCGGCCacUGCGg -3'
miRNA:   3'- -GCCAgUGCUUGUUGUGCUGGccGCGC- -5'
17051 5' -55.4 NC_004333.2 + 6939 0.77 0.19356
Target:  5'- gCGGgaagcgcaGCGAcgGCGACACGACCGGCGaCa -3'
miRNA:   3'- -GCCag------UGCU--UGUUGUGCUGGCCGC-Gc -5'
17051 5' -55.4 NC_004333.2 + 30551 0.76 0.215167
Target:  5'- uCGGcCACGGcACcgGGCGCGGCCGGCGUc -3'
miRNA:   3'- -GCCaGUGCU-UG--UUGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 19953 0.76 0.220883
Target:  5'- aCGGUCACGu--GACGCGcCCGGaCGCGc -3'
miRNA:   3'- -GCCAGUGCuugUUGUGCuGGCC-GCGC- -5'
17051 5' -55.4 NC_004333.2 + 20776 0.75 0.232703
Target:  5'- gGGUUACGGcaaacaugACGGCACGGCCGuCGCGc -3'
miRNA:   3'- gCCAGUGCU--------UGUUGUGCUGGCcGCGC- -5'
17051 5' -55.4 NC_004333.2 + 45707 0.75 0.232703
Target:  5'- -cGUCuCGAACAACGCGGCuucguuCGGCGCGc -3'
miRNA:   3'- gcCAGuGCUUGUUGUGCUG------GCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 5468 0.75 0.245051
Target:  5'- uCGGUCAgauCGAACGccgcccGCucguCGGCCGGCGUGg -3'
miRNA:   3'- -GCCAGU---GCUUGU------UGu---GCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 36557 0.74 0.271374
Target:  5'- aCGuUCGCGcGCGAagugACGGCCGGCGCGu -3'
miRNA:   3'- -GCcAGUGCuUGUUg---UGCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 28761 0.74 0.2783
Target:  5'- -cGUCGCGggUAGCGCGGCguaGGCGUa -3'
miRNA:   3'- gcCAGUGCuuGUUGUGCUGg--CCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.