miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17051 5' -55.4 NC_004333.2 + 30638 0.66 0.689883
Target:  5'- uCGGggaugugCGCGAucgcuucggACAGUGCGACCGGCuGCa -3'
miRNA:   3'- -GCCa------GUGCU---------UGUUGUGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 20141 0.66 0.689883
Target:  5'- cCGaUCACGAGCGACACGAUCaGUa-- -3'
miRNA:   3'- -GCcAGUGCUUGUUGUGCUGGcCGcgc -5'
17051 5' -55.4 NC_004333.2 + 33262 0.66 0.688803
Target:  5'- gCGGUCGuccaGGACGGCuuggaaaacugguACGACuCGGUGCu -3'
miRNA:   3'- -GCCAGUg---CUUGUUG-------------UGCUG-GCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 19228 0.66 0.679065
Target:  5'- aCGGcgCuCGAGCAAUACgGGCUGGaCGUGa -3'
miRNA:   3'- -GCCa-GuGCUUGUUGUG-CUGGCC-GCGC- -5'
17051 5' -55.4 NC_004333.2 + 4145 0.66 0.679065
Target:  5'- aCGGUCAgGAaugaguucguguACAGCGCG-CC-GCGCu -3'
miRNA:   3'- -GCCAGUgCU------------UGUUGUGCuGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 19558 0.66 0.679065
Target:  5'- cCGGUCgcACGGuCGGCGCGGCacaaggggaauCGcGCGCGa -3'
miRNA:   3'- -GCCAG--UGCUuGUUGUGCUG-----------GC-CGCGC- -5'
17051 5' -55.4 NC_004333.2 + 20957 0.66 0.679065
Target:  5'- aCGGgC-CGGACGcaaACGCG-CgCGGCGCGg -3'
miRNA:   3'- -GCCaGuGCUUGU---UGUGCuG-GCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 15399 0.66 0.679065
Target:  5'- cCGGUCGCaauGCAAggugccgcgcuUAUGGCCGGCgGCa -3'
miRNA:   3'- -GCCAGUGcu-UGUU-----------GUGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 47934 0.66 0.679065
Target:  5'- ---aCAuCGAACGGCACGGCgUGGgGCGa -3'
miRNA:   3'- gccaGU-GCUUGUUGUGCUG-GCCgCGC- -5'
17051 5' -55.4 NC_004333.2 + 10971 0.66 0.679065
Target:  5'- aGcGUCGCGcGgAACuCGgcACCGGCGCGc -3'
miRNA:   3'- gC-CAGUGCuUgUUGuGC--UGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 58 0.66 0.679065
Target:  5'- aCGGUCAC------CAUG-CCGGCGCGg -3'
miRNA:   3'- -GCCAGUGcuuguuGUGCuGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 2597 0.67 0.672552
Target:  5'- gCGGUCGUGAaggucgcccaauugcGCGACAgacCGACCG-CGCGg -3'
miRNA:   3'- -GCCAGUGCU---------------UGUUGU---GCUGGCcGCGC- -5'
17051 5' -55.4 NC_004333.2 + 2585 0.67 0.668203
Target:  5'- cCGGcaUCACGAucu-CGCGACCGG-GCu -3'
miRNA:   3'- -GCC--AGUGCUuguuGUGCUGGCCgCGc -5'
17051 5' -55.4 NC_004333.2 + 9718 0.67 0.668203
Target:  5'- gCGGuUCGCGAaacgccgcgucgGCGACAUGagcGCCGGaUGCGc -3'
miRNA:   3'- -GCC-AGUGCU------------UGUUGUGC---UGGCC-GCGC- -5'
17051 5' -55.4 NC_004333.2 + 44965 0.67 0.668203
Target:  5'- uCGGg-GCGGGCGGCGCGccggGCCGGCuCa -3'
miRNA:   3'- -GCCagUGCUUGUUGUGC----UGGCCGcGc -5'
17051 5' -55.4 NC_004333.2 + 18202 0.67 0.668203
Target:  5'- uCGG-CGcCGGugGCAGCGCGGCC-GCGCu -3'
miRNA:   3'- -GCCaGU-GCU--UGUUGUGCUGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 4989 0.67 0.668203
Target:  5'- aGG-CAuauuCGAACGACgACGACaCGGUGCc -3'
miRNA:   3'- gCCaGU----GCUUGUUG-UGCUG-GCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 12054 0.67 0.657308
Target:  5'- cCGGUCGCGcaggccgucgccAACcuugcguACGUGGCUGGCGCGc -3'
miRNA:   3'- -GCCAGUGC------------UUGu------UGUGCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 35551 0.67 0.657308
Target:  5'- gCGGUCA-GAAC--UugGcCCGGUGCGa -3'
miRNA:   3'- -GCCAGUgCUUGuuGugCuGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 30691 0.67 0.657308
Target:  5'- gCGGUCgaguGCGAGCAGCGUGAgCgCGGCGg- -3'
miRNA:   3'- -GCCAG----UGCUUGUUGUGCU-G-GCCGCgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.