miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17051 5' -55.4 NC_004333.2 + 58 0.66 0.679065
Target:  5'- aCGGUCAC------CAUG-CCGGCGCGg -3'
miRNA:   3'- -GCCAGUGcuuguuGUGCuGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 109 0.73 0.338798
Target:  5'- uCGG-CAcCGAGCAGCACGACaucGCGCa -3'
miRNA:   3'- -GCCaGU-GCUUGUUGUGCUGgc-CGCGc -5'
17051 5' -55.4 NC_004333.2 + 155 0.82 0.084415
Target:  5'- uCGG-CGCGAGC-ACACGAUCGGCGCc -3'
miRNA:   3'- -GCCaGUGCUUGuUGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 680 0.7 0.455028
Target:  5'- uGGUCGCGccGGCcggcgccucguucAGCGCGgcagucgccGCCGGCGCGu -3'
miRNA:   3'- gCCAGUGC--UUG-------------UUGUGC---------UGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 1287 0.72 0.372446
Target:  5'- uGGcgCGCGuuGCGuuACGCGAUCGGCGUGa -3'
miRNA:   3'- gCCa-GUGCu-UGU--UGUGCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 1333 0.69 0.538032
Target:  5'- ---aCACGAACAcgauCACGGCCGGuUGCa -3'
miRNA:   3'- gccaGUGCUUGUu---GUGCUGGCC-GCGc -5'
17051 5' -55.4 NC_004333.2 + 1446 0.66 0.721963
Target:  5'- uCGGUCAguucggugaucgUGAACuGguCGACCGGCaGCu -3'
miRNA:   3'- -GCCAGU------------GCUUGuUguGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 2585 0.67 0.668203
Target:  5'- cCGGcaUCACGAucu-CGCGACCGG-GCu -3'
miRNA:   3'- -GCC--AGUGCUuguuGUGCUGGCCgCGc -5'
17051 5' -55.4 NC_004333.2 + 2597 0.67 0.672552
Target:  5'- gCGGUCGUGAaggucgcccaauugcGCGACAgacCGACCG-CGCGg -3'
miRNA:   3'- -GCCAGUGCU---------------UGUUGU---GCUGGCcGCGC- -5'
17051 5' -55.4 NC_004333.2 + 2771 0.72 0.390101
Target:  5'- cCGGUCGCGuuCGuCACGACCGugaagcgguuGCGCa -3'
miRNA:   3'- -GCCAGUGCuuGUuGUGCUGGC----------CGCGc -5'
17051 5' -55.4 NC_004333.2 + 2864 0.66 0.721963
Target:  5'- gCGGcguUCGCGAACGACGuCGcAgCGGCGa- -3'
miRNA:   3'- -GCC---AGUGCUUGUUGU-GC-UgGCCGCgc -5'
17051 5' -55.4 NC_004333.2 + 3166 0.73 0.318139
Target:  5'- cCGGguugCACGGACGuauccugcgugaGCACGAggccggugagccggcCCGGCGCGc -3'
miRNA:   3'- -GCCa---GUGCUUGU------------UGUGCU---------------GGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 4145 0.66 0.679065
Target:  5'- aCGGUCAgGAaugaguucguguACAGCGCG-CC-GCGCu -3'
miRNA:   3'- -GCCAGUgCU------------UGUUGUGCuGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 4645 0.71 0.436557
Target:  5'- --aUCGCGAucaugGCGACGggcaGGCCGGCGCGc -3'
miRNA:   3'- gccAGUGCU-----UGUUGUg---CUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 4882 0.67 0.624525
Target:  5'- uCGG-CACGAGC-GCAUaGCCGGC-CGg -3'
miRNA:   3'- -GCCaGUGCUUGuUGUGcUGGCCGcGC- -5'
17051 5' -55.4 NC_004333.2 + 4989 0.67 0.668203
Target:  5'- aGG-CAuauuCGAACGACgACGACaCGGUGCc -3'
miRNA:   3'- gCCaGU----GCUUGUUG-UGCUG-GCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 5468 0.75 0.245051
Target:  5'- uCGGUCAgauCGAACGccgcccGCucguCGGCCGGCGUGg -3'
miRNA:   3'- -GCCAGU---GCUUGU------UGu---GCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 5532 0.68 0.602686
Target:  5'- aGGUCAUGccguggcCGGCgACGGCuUGGCGCGa -3'
miRNA:   3'- gCCAGUGCuu-----GUUG-UGCUG-GCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 6629 0.68 0.579863
Target:  5'- cCGGUCGUGAGCAuCGCGacgcugacgauguGCCGGUGUu -3'
miRNA:   3'- -GCCAGUGCUUGUuGUGC-------------UGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 6641 0.71 0.427011
Target:  5'- uCGaUCGCGcucGGCAGCGCGcUCGGCGCGc -3'
miRNA:   3'- -GCcAGUGC---UUGUUGUGCuGGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.