miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17051 5' -55.4 NC_004333.2 + 155 0.82 0.084415
Target:  5'- uCGG-CGCGAGC-ACACGAUCGGCGCc -3'
miRNA:   3'- -GCCaGUGCUUGuUGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 1287 0.72 0.372446
Target:  5'- uGGcgCGCGuuGCGuuACGCGAUCGGCGUGa -3'
miRNA:   3'- gCCa-GUGCu-UGU--UGUGCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 38919 0.72 0.381205
Target:  5'- aCGGcaacaagCACGAgacgaaccACGACGCGACCGGCa-- -3'
miRNA:   3'- -GCCa------GUGCU--------UGUUGUGCUGGCCGcgc -5'
17051 5' -55.4 NC_004333.2 + 31059 0.66 0.732495
Target:  5'- uGGauauUCAcgcCGAACGACGCGAgcgccugcagguUCGGCGCc -3'
miRNA:   3'- gCC----AGU---GCUUGUUGUGCU------------GGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 32322 0.77 0.188463
Target:  5'- uCGGUCACGAGCGcguGCACGgcuGCCGGguCGCu -3'
miRNA:   3'- -GCCAGUGCUUGU---UGUGC---UGGCC--GCGc -5'
17051 5' -55.4 NC_004333.2 + 36121 0.77 0.19356
Target:  5'- aGGUUgGCGAcgGCcuGCGCGACCGGCGCa -3'
miRNA:   3'- gCCAG-UGCU--UGu-UGUGCUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 25498 0.74 0.299923
Target:  5'- gCGuGUCAUGAAguaGAUGCGGCCGaGCGCGu -3'
miRNA:   3'- -GC-CAGUGCUUg--UUGUGCUGGC-CGCGC- -5'
17051 5' -55.4 NC_004333.2 + 28892 0.74 0.299923
Target:  5'- gCGaUCGCGcuCGGCGCaGGCCGGCGCa -3'
miRNA:   3'- -GCcAGUGCuuGUUGUG-CUGGCCGCGc -5'
17051 5' -55.4 NC_004333.2 + 3166 0.73 0.318139
Target:  5'- cCGGguugCACGGACGuauccugcgugaGCACGAggccggugagccggcCCGGCGCGc -3'
miRNA:   3'- -GCCa---GUGCUUGU------------UGUGCU---------------GGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 15510 0.72 0.355342
Target:  5'- gCGGUCACcGGCGGCGCGuCaaGCGCGa -3'
miRNA:   3'- -GCCAGUGcUUGUUGUGCuGgcCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 19615 0.72 0.346999
Target:  5'- aGGUCACGGcgAGCGCGGC-GaGCGCGg -3'
miRNA:   3'- gCCAGUGCUugUUGUGCUGgC-CGCGC- -5'
17051 5' -55.4 NC_004333.2 + 31230 0.73 0.307414
Target:  5'- cCGGUCGCGAcgGCcGCGCGGCgCaGCGCc -3'
miRNA:   3'- -GCCAGUGCU--UGuUGUGCUG-GcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 15187 0.8 0.121721
Target:  5'- aGGUCGCGuucGCAauccGCACGGCCGGCaGCa -3'
miRNA:   3'- gCCAGUGCu--UGU----UGUGCUGGCCG-CGc -5'
17051 5' -55.4 NC_004333.2 + 45440 0.72 0.346999
Target:  5'- aCGGcgcauUCGCGAGCAugGCGGCCaacuacGGCGUc -3'
miRNA:   3'- -GCC-----AGUGCUUGUugUGCUGG------CCGCGc -5'
17051 5' -55.4 NC_004333.2 + 13356 0.77 0.169242
Target:  5'- aCGGUgUACGGgcGCGGCACGAgCGGCGUGu -3'
miRNA:   3'- -GCCA-GUGCU--UGUUGUGCUgGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 8525 0.73 0.306658
Target:  5'- -aGUCGCccgugccGAACAGCGCGACCGGCa-- -3'
miRNA:   3'- gcCAGUG-------CUUGUUGUGCUGGCCGcgc -5'
17051 5' -55.4 NC_004333.2 + 7998 0.72 0.346999
Target:  5'- gCGGUgAUGAACGcCGCGACCaGCGUc -3'
miRNA:   3'- -GCCAgUGCUUGUuGUGCUGGcCGCGc -5'
17051 5' -55.4 NC_004333.2 + 18570 0.72 0.372446
Target:  5'- gCGGcgaaUC-CGAacccguucguGCAACaaACGACCGGCGCGg -3'
miRNA:   3'- -GCC----AGuGCU----------UGUUG--UGCUGGCCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 30625 0.77 0.178623
Target:  5'- aGGUCGUGcAGCAGCGCGGCaaGGCGCGg -3'
miRNA:   3'- gCCAGUGC-UUGUUGUGCUGg-CCGCGC- -5'
17051 5' -55.4 NC_004333.2 + 41722 0.77 0.19356
Target:  5'- aCGG-CGCGAuCAACGaggaGAUCGGCGCGg -3'
miRNA:   3'- -GCCaGUGCUuGUUGUg---CUGGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.