miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17052 5' -53.8 NC_004333.2 + 21652 0.66 0.797042
Target:  5'- uUCGCCgCAccugucGGCGcgccGGACUUCAucgACGGa -3'
miRNA:   3'- -GGCGGaGUu-----CCGCu---CCUGAAGU---UGCC- -5'
17052 5' -53.8 NC_004333.2 + 22391 0.66 0.77725
Target:  5'- gCCGUCUgCcAGGuCGAGG-CUUC-GCGGc -3'
miRNA:   3'- -GGCGGA-GuUCC-GCUCCuGAAGuUGCC- -5'
17052 5' -53.8 NC_004333.2 + 20254 0.66 0.77725
Target:  5'- gCCGCUugugaUCGAGGCGAacGCUUCGuACGc -3'
miRNA:   3'- -GGCGG-----AGUUCCGCUccUGAAGU-UGCc -5'
17052 5' -53.8 NC_004333.2 + 41277 0.67 0.734881
Target:  5'- -gGCgUCAagacgaaGGGCGGcGACUUCGACGa -3'
miRNA:   3'- ggCGgAGU-------UCCGCUcCUGAAGUUGCc -5'
17052 5' -53.8 NC_004333.2 + 34584 0.67 0.714604
Target:  5'- uCCGCaCUUggGGCGAaGcGA--UCGGCGGc -3'
miRNA:   3'- -GGCG-GAGuuCCGCU-C-CUgaAGUUGCC- -5'
17052 5' -53.8 NC_004333.2 + 32032 0.68 0.682015
Target:  5'- cUCGCCcCAGGaUGAGGGaauggUCAGCGGa -3'
miRNA:   3'- -GGCGGaGUUCcGCUCCUga---AGUUGCC- -5'
17052 5' -53.8 NC_004333.2 + 1239 0.68 0.671041
Target:  5'- gCCGCCUUGGcugcGcGCGAGG-CUUC-GCGGc -3'
miRNA:   3'- -GGCGGAGUU----C-CGCUCCuGAAGuUGCC- -5'
17052 5' -53.8 NC_004333.2 + 24220 0.69 0.63794
Target:  5'- gCCGCCguaaAAcGGCGcuugcccccAGGGCUUCcACGGu -3'
miRNA:   3'- -GGCGGag--UU-CCGC---------UCCUGAAGuUGCC- -5'
17052 5' -53.8 NC_004333.2 + 23341 0.69 0.63794
Target:  5'- gCCGCCgac-GGuCGAGGucuACUUCAACGu -3'
miRNA:   3'- -GGCGGaguuCC-GCUCC---UGAAGUUGCc -5'
17052 5' -53.8 NC_004333.2 + 44811 0.69 0.615829
Target:  5'- aCGCCgcgacgCucGGCGAGGACaUgGACGa -3'
miRNA:   3'- gGCGGa-----GuuCCGCUCCUGaAgUUGCc -5'
17052 5' -53.8 NC_004333.2 + 35797 0.69 0.60479
Target:  5'- gCGCCgggCGGGGCGcGGGCgggCGcuACGGc -3'
miRNA:   3'- gGCGGa--GUUCCGCuCCUGaa-GU--UGCC- -5'
17052 5' -53.8 NC_004333.2 + 23650 0.7 0.571851
Target:  5'- cUCGCCUUGAGGCGGaacgccgccGGcCUcCGGCGGc -3'
miRNA:   3'- -GGCGGAGUUCCGCU---------CCuGAaGUUGCC- -5'
17052 5' -53.8 NC_004333.2 + 29416 0.71 0.511716
Target:  5'- uUCGCCgUCGcGGCGcuggcugcccuucauAGcGACUUCGACGGu -3'
miRNA:   3'- -GGCGG-AGUuCCGC---------------UC-CUGAAGUUGCC- -5'
17052 5' -53.8 NC_004333.2 + 5324 0.72 0.466367
Target:  5'- cCCGUCUCAcuggcagaugcGGCGcGGGCUUCuuCGGa -3'
miRNA:   3'- -GGCGGAGUu----------CCGCuCCUGAAGuuGCC- -5'
17052 5' -53.8 NC_004333.2 + 29764 0.72 0.446449
Target:  5'- gCCGCCgaucgCGAGGCGuuGcGCUUCgGACGGc -3'
miRNA:   3'- -GGCGGa----GUUCCGCucC-UGAAG-UUGCC- -5'
17052 5' -53.8 NC_004333.2 + 45294 0.75 0.313139
Target:  5'- cCCGaagCUCGAGGCGuucgagaAGGGCaUCGACGGu -3'
miRNA:   3'- -GGCg--GAGUUCCGC-------UCCUGaAGUUGCC- -5'
17052 5' -53.8 NC_004333.2 + 24536 1.12 0.000979
Target:  5'- uCCGCCUCAAGGCGAGGACUUCAACGGc -3'
miRNA:   3'- -GGCGGAGUUCCGCUCCUGAAGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.