miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17053 3' -54.6 NC_004333.2 + 37074 0.66 0.739451
Target:  5'- uUCGUGCCGcuguucgUCGCGCAcGAUcAUUCc -3'
miRNA:   3'- gAGCACGGCa------AGCGCGUcUUGcUGAG- -5'
17053 3' -54.6 NC_004333.2 + 17397 0.66 0.739451
Target:  5'- aUCGaGCUGcUCGCGCAGcGCGG-UCa -3'
miRNA:   3'- gAGCaCGGCaAGCGCGUCuUGCUgAG- -5'
17053 3' -54.6 NC_004333.2 + 27400 0.66 0.72557
Target:  5'- -cCGUGCCGUcaUguuugccguaacccUGCGCGGcGACGGCUg -3'
miRNA:   3'- gaGCACGGCA--A--------------GCGCGUC-UUGCUGAg -5'
17053 3' -54.6 NC_004333.2 + 3845 0.66 0.718028
Target:  5'- aUCGUgauaGCCGUguugcCGcCGCAGAACGAggUUCc -3'
miRNA:   3'- gAGCA----CGGCAa----GC-GCGUCUUGCU--GAG- -5'
17053 3' -54.6 NC_004333.2 + 23477 0.66 0.718028
Target:  5'- -aCGcUGUCGcgCGCGCGGAuCGGCa- -3'
miRNA:   3'- gaGC-ACGGCaaGCGCGUCUuGCUGag -5'
17053 3' -54.6 NC_004333.2 + 11986 0.66 0.707179
Target:  5'- aUCGcgGCCGUaUCGCGguGcAACGgaugcggcaGCUCa -3'
miRNA:   3'- gAGCa-CGGCA-AGCGCguC-UUGC---------UGAG- -5'
17053 3' -54.6 NC_004333.2 + 28844 0.66 0.707179
Target:  5'- aUCGUGCCGgcUGCGUucguAGccGGCGcGCUCa -3'
miRNA:   3'- gAGCACGGCaaGCGCG----UC--UUGC-UGAG- -5'
17053 3' -54.6 NC_004333.2 + 12166 0.66 0.707179
Target:  5'- uCUCGUGUC--UCGCGCcGAGCcGCUUc -3'
miRNA:   3'- -GAGCACGGcaAGCGCGuCUUGcUGAG- -5'
17053 3' -54.6 NC_004333.2 + 20755 0.66 0.707179
Target:  5'- gUCGacaGCCGUcgcCGCGCAGGguuACGGCa- -3'
miRNA:   3'- gAGCa--CGGCAa--GCGCGUCU---UGCUGag -5'
17053 3' -54.6 NC_004333.2 + 32953 0.66 0.696256
Target:  5'- -gCGUGCgCG-UCGgGCAGcuuuGCGACUUc -3'
miRNA:   3'- gaGCACG-GCaAGCgCGUCu---UGCUGAG- -5'
17053 3' -54.6 NC_004333.2 + 27322 0.67 0.685268
Target:  5'- cCUUGUGgCGUUCGaGCAGGaugcGCGGC-Cg -3'
miRNA:   3'- -GAGCACgGCAAGCgCGUCU----UGCUGaG- -5'
17053 3' -54.6 NC_004333.2 + 25912 0.67 0.685268
Target:  5'- uCUCGgGCUGgcuUgGCGCAGAGCGcACg- -3'
miRNA:   3'- -GAGCaCGGCa--AgCGCGUCUUGC-UGag -5'
17053 3' -54.6 NC_004333.2 + 38727 0.67 0.685268
Target:  5'- -cCGcGCCuggUGCGCAGGACGGCg- -3'
miRNA:   3'- gaGCaCGGcaaGCGCGUCUUGCUGag -5'
17053 3' -54.6 NC_004333.2 + 6078 0.67 0.674229
Target:  5'- cCUCGcgacacGCCucgUCGCGCAGcACGACg- -3'
miRNA:   3'- -GAGCa-----CGGca-AGCGCGUCuUGCUGag -5'
17053 3' -54.6 NC_004333.2 + 45740 0.67 0.663149
Target:  5'- -aCGUGCCGaUCGCGauauACGACa- -3'
miRNA:   3'- gaGCACGGCaAGCGCgucuUGCUGag -5'
17053 3' -54.6 NC_004333.2 + 14753 0.67 0.663149
Target:  5'- -cCGgGUCGUUCaGCGCggGGAACGACa- -3'
miRNA:   3'- gaGCaCGGCAAG-CGCG--UCUUGCUGag -5'
17053 3' -54.6 NC_004333.2 + 15481 0.67 0.65204
Target:  5'- -gCGUGCCGagCGCaaCAGGGCuGCUCg -3'
miRNA:   3'- gaGCACGGCaaGCGc-GUCUUGcUGAG- -5'
17053 3' -54.6 NC_004333.2 + 12470 0.67 0.645364
Target:  5'- aUUGUGCCugagccgacacucgcGUUCGCGacugaAGGGCGuCUCg -3'
miRNA:   3'- gAGCACGG---------------CAAGCGCg----UCUUGCuGAG- -5'
17053 3' -54.6 NC_004333.2 + 22270 0.67 0.640911
Target:  5'- -aCGUGCaa---GCGCAGGGCGGCg- -3'
miRNA:   3'- gaGCACGgcaagCGCGUCUUGCUGag -5'
17053 3' -54.6 NC_004333.2 + 29714 0.67 0.629775
Target:  5'- cCUCcgGUGCCGggUUGCGCGaacuuuuuGAACGcGCUCg -3'
miRNA:   3'- -GAG--CACGGCa-AGCGCGU--------CUUGC-UGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.