miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17053 5' -55.9 NC_004333.2 + 22504 0.66 0.687823
Target:  5'- aUCaGGUcGCCgCGUUcGCGACGgCCGGCa -3'
miRNA:   3'- -AGcUCGaCGG-GCAA-UGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 39760 0.66 0.687823
Target:  5'- gUCG-GCgGCaCCGUaucgGCGACGUugcUCGACa -3'
miRNA:   3'- -AGCuCGaCG-GGCAa---UGCUGCA---GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 18814 0.66 0.676942
Target:  5'- aCGAGCcGCuuGaagUGCG-CGUgCGACa -3'
miRNA:   3'- aGCUCGaCGggCa--AUGCuGCAgGCUG- -5'
17053 5' -55.9 NC_004333.2 + 31195 0.66 0.676942
Target:  5'- gCGAGUUGCgCGUUcgguuucuCGGCuGUaCCGACg -3'
miRNA:   3'- aGCUCGACGgGCAAu-------GCUG-CA-GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 2375 0.66 0.676942
Target:  5'- aUCGAcGCggcguaGCCCaugACGGCG-CCGGCg -3'
miRNA:   3'- -AGCU-CGa-----CGGGcaaUGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 8579 0.66 0.675851
Target:  5'- aCGcGUUGCUCGUUcaugaucACG-CGUCCGAa -3'
miRNA:   3'- aGCuCGACGGGCAA-------UGCuGCAGGCUg -5'
17053 5' -55.9 NC_004333.2 + 15112 0.66 0.666019
Target:  5'- cCGAGUUGCCagcgcuCGugG-CCGACc -3'
miRNA:   3'- aGCUCGACGGgcaau-GCugCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 44947 0.66 0.651774
Target:  5'- -aGAuGCUGCCCGgcgucaucggggcggGCGGCGcgccgggCCGGCu -3'
miRNA:   3'- agCU-CGACGGGCaa-------------UGCUGCa------GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 21277 0.66 0.64409
Target:  5'- aCGaAGCUGUCCGaUGCGuacaccacauugACGUCgCGAUa -3'
miRNA:   3'- aGC-UCGACGGGCaAUGC------------UGCAG-GCUG- -5'
17053 5' -55.9 NC_004333.2 + 32937 0.66 0.630906
Target:  5'- uUCGcGCUGCuuGgcacccuaucugUACGGCcGUCUGACc -3'
miRNA:   3'- -AGCuCGACGggCa-----------AUGCUG-CAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 9116 0.67 0.622116
Target:  5'- aCGAGUcGCgCGUacuCGcCGUCCGGCu -3'
miRNA:   3'- aGCUCGaCGgGCAau-GCuGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 1184 0.67 0.622116
Target:  5'- uUCGGGUcuuUGCCCGccuCGAucucCGUCCGGa -3'
miRNA:   3'- -AGCUCG---ACGGGCaauGCU----GCAGGCUg -5'
17053 5' -55.9 NC_004333.2 + 32693 0.67 0.615528
Target:  5'- gCGAGCaGCCCuGUUGCGcucggcacgccaagcGCG-CCGAUc -3'
miRNA:   3'- aGCUCGaCGGG-CAAUGC---------------UGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 38871 0.67 0.589244
Target:  5'- aCGAGCUGaaCCCGgc-CGGCGgugaaaacCCGACc -3'
miRNA:   3'- aGCUCGAC--GGGCaauGCUGCa-------GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 38699 0.67 0.589244
Target:  5'- cUCGAGCaGCUCG--GCGGCgGUgCGGCa -3'
miRNA:   3'- -AGCUCGaCGGGCaaUGCUG-CAgGCUG- -5'
17053 5' -55.9 NC_004333.2 + 37051 0.67 0.578347
Target:  5'- uUCGuGCUGCCCGgcgagGCGAuuuCGUgCCG-Cu -3'
miRNA:   3'- -AGCuCGACGGGCaa---UGCU---GCA-GGCuG- -5'
17053 5' -55.9 NC_004333.2 + 41311 0.67 0.578347
Target:  5'- cCGAGCUcGCCCGgcgcGCGAUGgacgUGACg -3'
miRNA:   3'- aGCUCGA-CGGGCaa--UGCUGCag--GCUG- -5'
17053 5' -55.9 NC_004333.2 + 45517 0.67 0.567494
Target:  5'- --aAGCUGCCggCGUUGCGGCugauacgCCGGCa -3'
miRNA:   3'- agcUCGACGG--GCAAUGCUGca-----GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 15497 0.67 0.567494
Target:  5'- -aGGGCUGCUC---GCGGCGgucaCCGGCg -3'
miRNA:   3'- agCUCGACGGGcaaUGCUGCa---GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 11719 0.68 0.545953
Target:  5'- gCGuGCUGgcguCCUGc-GCGAUGUCCGGCa -3'
miRNA:   3'- aGCuCGAC----GGGCaaUGCUGCAGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.