Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17053 | 5' | -55.9 | NC_004333.2 | + | 22504 | 0.66 | 0.687823 |
Target: 5'- aUCaGGUcGCCgCGUUcGCGACGgCCGGCa -3' miRNA: 3'- -AGcUCGaCGG-GCAA-UGCUGCaGGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 21277 | 0.66 | 0.64409 |
Target: 5'- aCGaAGCUGUCCGaUGCGuacaccacauugACGUCgCGAUa -3' miRNA: 3'- aGC-UCGACGGGCaAUGC------------UGCAG-GCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 2375 | 0.66 | 0.676942 |
Target: 5'- aUCGAcGCggcguaGCCCaugACGGCG-CCGGCg -3' miRNA: 3'- -AGCU-CGa-----CGGGcaaUGCUGCaGGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 32937 | 0.66 | 0.630906 |
Target: 5'- uUCGcGCUGCuuGgcacccuaucugUACGGCcGUCUGACc -3' miRNA: 3'- -AGCuCGACGggCa-----------AUGCUG-CAGGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 44947 | 0.66 | 0.651774 |
Target: 5'- -aGAuGCUGCCCGgcgucaucggggcggGCGGCGcgccgggCCGGCu -3' miRNA: 3'- agCU-CGACGGGCaa-------------UGCUGCa------GGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 15112 | 0.66 | 0.666019 |
Target: 5'- cCGAGUUGCCagcgcuCGugG-CCGACc -3' miRNA: 3'- aGCUCGACGGgcaau-GCugCaGGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 8579 | 0.66 | 0.675851 |
Target: 5'- aCGcGUUGCUCGUUcaugaucACG-CGUCCGAa -3' miRNA: 3'- aGCuCGACGGGCAA-------UGCuGCAGGCUg -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 31195 | 0.66 | 0.676942 |
Target: 5'- gCGAGUUGCgCGUUcgguuucuCGGCuGUaCCGACg -3' miRNA: 3'- aGCUCGACGgGCAAu-------GCUG-CA-GGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 18814 | 0.66 | 0.676942 |
Target: 5'- aCGAGCcGCuuGaagUGCG-CGUgCGACa -3' miRNA: 3'- aGCUCGaCGggCa--AUGCuGCAgGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 39760 | 0.66 | 0.687823 |
Target: 5'- gUCG-GCgGCaCCGUaucgGCGACGUugcUCGACa -3' miRNA: 3'- -AGCuCGaCG-GGCAa---UGCUGCA---GGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 41311 | 0.67 | 0.578347 |
Target: 5'- cCGAGCUcGCCCGgcgcGCGAUGgacgUGACg -3' miRNA: 3'- aGCUCGA-CGGGCaa--UGCUGCag--GCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 1184 | 0.67 | 0.622116 |
Target: 5'- uUCGGGUcuuUGCCCGccuCGAucucCGUCCGGa -3' miRNA: 3'- -AGCUCG---ACGGGCaauGCU----GCAGGCUg -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 45517 | 0.67 | 0.567494 |
Target: 5'- --aAGCUGCCggCGUUGCGGCugauacgCCGGCa -3' miRNA: 3'- agcUCGACGG--GCAAUGCUGca-----GGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 37051 | 0.67 | 0.578347 |
Target: 5'- uUCGuGCUGCCCGgcgagGCGAuuuCGUgCCG-Cu -3' miRNA: 3'- -AGCuCGACGGGCaa---UGCU---GCA-GGCuG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 38871 | 0.67 | 0.589244 |
Target: 5'- aCGAGCUGaaCCCGgc-CGGCGgugaaaacCCGACc -3' miRNA: 3'- aGCUCGAC--GGGCaauGCUGCa-------GGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 38699 | 0.67 | 0.589244 |
Target: 5'- cUCGAGCaGCUCG--GCGGCgGUgCGGCa -3' miRNA: 3'- -AGCUCGaCGGGCaaUGCUG-CAgGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 32693 | 0.67 | 0.615528 |
Target: 5'- gCGAGCaGCCCuGUUGCGcucggcacgccaagcGCG-CCGAUc -3' miRNA: 3'- aGCUCGaCGGG-CAAUGC---------------UGCaGGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 9116 | 0.67 | 0.622116 |
Target: 5'- aCGAGUcGCgCGUacuCGcCGUCCGGCu -3' miRNA: 3'- aGCUCGaCGgGCAau-GCuGCAGGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 15497 | 0.67 | 0.567494 |
Target: 5'- -aGGGCUGCUC---GCGGCGgucaCCGGCg -3' miRNA: 3'- agCUCGACGGGcaaUGCUGCa---GGCUG- -5' |
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17053 | 5' | -55.9 | NC_004333.2 | + | 42663 | 0.68 | 0.545953 |
Target: 5'- gUCGAGCaGCCCGcaACaGCG-CCGAUc -3' miRNA: 3'- -AGCUCGaCGGGCaaUGcUGCaGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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