miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17053 5' -55.9 NC_004333.2 + 1184 0.67 0.622116
Target:  5'- uUCGGGUcuuUGCCCGccuCGAucucCGUCCGGa -3'
miRNA:   3'- -AGCUCG---ACGGGCaauGCU----GCAGGCUg -5'
17053 5' -55.9 NC_004333.2 + 2375 0.66 0.676942
Target:  5'- aUCGAcGCggcguaGCCCaugACGGCG-CCGGCg -3'
miRNA:   3'- -AGCU-CGa-----CGGGcaaUGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 6712 0.71 0.360853
Target:  5'- cUCGAGCUcGCCaUGgaucACGACGgCCGACu -3'
miRNA:   3'- -AGCUCGA-CGG-GCaa--UGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 8579 0.66 0.675851
Target:  5'- aCGcGUUGCUCGUUcaugaucACG-CGUCCGAa -3'
miRNA:   3'- aGCuCGACGGGCAA-------UGCuGCAGGCUg -5'
17053 5' -55.9 NC_004333.2 + 8968 0.68 0.524681
Target:  5'- gCGGGCUGgaucgugggCCGUgcgcgGCGGCGaCCGACg -3'
miRNA:   3'- aGCUCGACg--------GGCAa----UGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 9116 0.67 0.622116
Target:  5'- aCGAGUcGCgCGUacuCGcCGUCCGGCu -3'
miRNA:   3'- aGCUCGaCGgGCAau-GCuGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 9315 0.71 0.364282
Target:  5'- aCGGGCggcguucguauggcGCCCGgUACG-UGUCCGACg -3'
miRNA:   3'- aGCUCGa-------------CGGGCaAUGCuGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 9543 0.71 0.360853
Target:  5'- aCGAGCUGCUUcaaUGCGGCG-CCGAUc -3'
miRNA:   3'- aGCUCGACGGGca-AUGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 11719 0.68 0.545953
Target:  5'- gCGuGCUGgcguCCUGc-GCGAUGUCCGGCa -3'
miRNA:   3'- aGCuCGAC----GGGCaaUGCUGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 13062 0.69 0.473016
Target:  5'- cUGAaCUGCuuG--ACGAUGUCCGACa -3'
miRNA:   3'- aGCUcGACGggCaaUGCUGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 14991 0.69 0.453072
Target:  5'- aUCGAGaaGCCgGUUAgcgggccgcCGACG-CCGACg -3'
miRNA:   3'- -AGCUCgaCGGgCAAU---------GCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 15112 0.66 0.666019
Target:  5'- cCGAGUUGCCagcgcuCGugG-CCGACc -3'
miRNA:   3'- aGCUCGACGGgcaau-GCugCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 15497 0.67 0.567494
Target:  5'- -aGGGCUGCUC---GCGGCGgucaCCGGCg -3'
miRNA:   3'- agCUCGACGGGcaaUGCUGCa---GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 15768 0.72 0.319904
Target:  5'- gCGAGCUGCgCGagGCG-CGggCCGACa -3'
miRNA:   3'- aGCUCGACGgGCaaUGCuGCa-GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 17397 0.72 0.301522
Target:  5'- aUCGAGCUGCUCGcgcagcgcggucACGACGcgCUGACg -3'
miRNA:   3'- -AGCUCGACGGGCaa----------UGCUGCa-GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 18048 0.73 0.275495
Target:  5'- aUCGcGCUGCCCGcUGCuGCGcagUCCGACc -3'
miRNA:   3'- -AGCuCGACGGGCaAUGcUGC---AGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 18814 0.66 0.676942
Target:  5'- aCGAGCcGCuuGaagUGCG-CGUgCGACa -3'
miRNA:   3'- aGCUCGaCGggCa--AUGCuGCAgGCUG- -5'
17053 5' -55.9 NC_004333.2 + 21277 0.66 0.64409
Target:  5'- aCGaAGCUGUCCGaUGCGuacaccacauugACGUCgCGAUa -3'
miRNA:   3'- aGC-UCGACGGGCaAUGC------------UGCAG-GCUG- -5'
17053 5' -55.9 NC_004333.2 + 22504 0.66 0.687823
Target:  5'- aUCaGGUcGCCgCGUUcGCGACGgCCGGCa -3'
miRNA:   3'- -AGcUCGaCGG-GCAA-UGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 22878 0.72 0.327808
Target:  5'- gUCGccGGCgucgGCCCgGUUGCGACG-CCGAa -3'
miRNA:   3'- -AGC--UCGa---CGGG-CAAUGCUGCaGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.