miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17053 5' -55.9 NC_004333.2 + 41811 0.74 0.248718
Target:  5'- gUCaAGCUGCCCGacggcacgACGGCGcCCGGCc -3'
miRNA:   3'- -AGcUCGACGGGCaa------UGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 8968 0.68 0.524681
Target:  5'- gCGGGCUGgaucgugggCCGUgcgcgGCGGCGaCCGACg -3'
miRNA:   3'- aGCUCGACg--------GGCAa----UGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 9543 0.71 0.360853
Target:  5'- aCGAGCUGCUUcaaUGCGGCG-CCGAUc -3'
miRNA:   3'- aGCUCGACGGGca-AUGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 36076 0.72 0.319904
Target:  5'- aCGAGCUgGCCCGUgacGCGGCG-CUGcGCg -3'
miRNA:   3'- aGCUCGA-CGGGCAa--UGCUGCaGGC-UG- -5'
17053 5' -55.9 NC_004333.2 + 25445 0.73 0.28254
Target:  5'- cCGGGCgUGCCgGUUACGACGacacCCGGg -3'
miRNA:   3'- aGCUCG-ACGGgCAAUGCUGCa---GGCUg -5'
17053 5' -55.9 NC_004333.2 + 18048 0.73 0.275495
Target:  5'- aUCGcGCUGCCCGcUGCuGCGcagUCCGACc -3'
miRNA:   3'- -AGCuCGACGGGCaAUGcUGC---AGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 21277 0.66 0.64409
Target:  5'- aCGaAGCUGUCCGaUGCGuacaccacauugACGUCgCGAUa -3'
miRNA:   3'- aGC-UCGACGGGCaAUGC------------UGCAG-GCUG- -5'
17053 5' -55.9 NC_004333.2 + 1184 0.67 0.622116
Target:  5'- uUCGGGUcuuUGCCCGccuCGAucucCGUCCGGa -3'
miRNA:   3'- -AGCUCG---ACGGGCaauGCU----GCAGGCUg -5'
17053 5' -55.9 NC_004333.2 + 42663 0.68 0.545953
Target:  5'- gUCGAGCaGCCCGcaACaGCG-CCGAUc -3'
miRNA:   3'- -AGCUCGaCGGGCaaUGcUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 13062 0.69 0.473016
Target:  5'- cUGAaCUGCuuG--ACGAUGUCCGACa -3'
miRNA:   3'- aGCUcGACGggCaaUGCUGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 17397 0.72 0.301522
Target:  5'- aUCGAGCUGCUCGcgcagcgcggucACGACGcgCUGACg -3'
miRNA:   3'- -AGCUCGACGGGCaa----------UGCUGCa-GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 35881 0.74 0.261828
Target:  5'- -aGAGCcgGCCCGUUGCGACGcgcacgCCGu- -3'
miRNA:   3'- agCUCGa-CGGGCAAUGCUGCa-----GGCug -5'
17053 5' -55.9 NC_004333.2 + 15497 0.67 0.567494
Target:  5'- -aGGGCUGCUC---GCGGCGgucaCCGGCg -3'
miRNA:   3'- agCUCGACGGGcaaUGCUGCa---GGCUG- -5'
17053 5' -55.9 NC_004333.2 + 43627 0.74 0.261828
Target:  5'- aCGAGCUcacgGCCCGU----GCGUCCGGCc -3'
miRNA:   3'- aGCUCGA----CGGGCAaugcUGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 14991 0.69 0.453072
Target:  5'- aUCGAGaaGCCgGUUAgcgggccgcCGACG-CCGACg -3'
miRNA:   3'- -AGCUCgaCGGgCAAU---------GCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 41311 0.67 0.578347
Target:  5'- cCGAGCUcGCCCGgcgcGCGAUGgacgUGACg -3'
miRNA:   3'- aGCUCGA-CGGGCaa--UGCUGCag--GCUG- -5'
17053 5' -55.9 NC_004333.2 + 2375 0.66 0.676942
Target:  5'- aUCGAcGCggcguaGCCCaugACGGCG-CCGGCg -3'
miRNA:   3'- -AGCU-CGa-----CGGGcaaUGCUGCaGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 25625 0.73 0.275495
Target:  5'- gCGAGUUGCCC-UUGCGGCGUCg--- -3'
miRNA:   3'- aGCUCGACGGGcAAUGCUGCAGgcug -5'
17053 5' -55.9 NC_004333.2 + 11719 0.68 0.545953
Target:  5'- gCGuGCUGgcguCCUGc-GCGAUGUCCGGCa -3'
miRNA:   3'- aGCuCGAC----GGGCaaUGCUGCAGGCUG- -5'
17053 5' -55.9 NC_004333.2 + 27664 0.68 0.524681
Target:  5'- gCGAGCgGCgCG--GCGGCGgCCGGCa -3'
miRNA:   3'- aGCUCGaCGgGCaaUGCUGCaGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.