miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17054 3' -53.7 NC_004333.2 + 42896 0.66 0.783612
Target:  5'- aGCGAGACGcCUGAUGaGC-CGCCcccguaucgcaucacGUUCg -3'
miRNA:   3'- -UGUUCUGC-GACUGCaUGcGCGG---------------CAAG- -5'
17054 3' -53.7 NC_004333.2 + 14471 0.66 0.783612
Target:  5'- cACAGGACGUUGACGcuugUACcaucuaccgcaggggGCGUCGcaUUCa -3'
miRNA:   3'- -UGUUCUGCGACUGC----AUG---------------CGCGGC--AAG- -5'
17054 3' -53.7 NC_004333.2 + 39042 0.66 0.77955
Target:  5'- gGCAAaGCGC-GACGUGCGUuaCGUgcUCg -3'
miRNA:   3'- -UGUUcUGCGaCUGCAUGCGcgGCA--AG- -5'
17054 3' -53.7 NC_004333.2 + 20269 0.66 0.77955
Target:  5'- gGCGA-ACGCUu-CGUACGCGCUGa-- -3'
miRNA:   3'- -UGUUcUGCGAcuGCAUGCGCGGCaag -5'
17054 3' -53.7 NC_004333.2 + 27389 0.66 0.77955
Target:  5'- ---cGGCGC-GACGgcCGUGCCGUc- -3'
miRNA:   3'- uguuCUGCGaCUGCauGCGCGGCAag -5'
17054 3' -53.7 NC_004333.2 + 4225 0.66 0.778531
Target:  5'- cGCGuuGACGCUcgagaacaucGGCGUGaggaugcCGCGCaCGUUCg -3'
miRNA:   3'- -UGUu-CUGCGA----------CUGCAU-------GCGCG-GCAAG- -5'
17054 3' -53.7 NC_004333.2 + 19490 0.66 0.769287
Target:  5'- uGCGAucGGCGCUGGCGcgcugGCGgCGCuCGUg- -3'
miRNA:   3'- -UGUU--CUGCGACUGCa----UGC-GCG-GCAag -5'
17054 3' -53.7 NC_004333.2 + 25115 0.66 0.758875
Target:  5'- gGCAcGGCGagcACGgcgGCGCGCaCGUUCg -3'
miRNA:   3'- -UGUuCUGCgacUGCa--UGCGCG-GCAAG- -5'
17054 3' -53.7 NC_004333.2 + 9302 0.66 0.748329
Target:  5'- cGCGGGuGCGCgGACGg--GCGgCGUUCg -3'
miRNA:   3'- -UGUUC-UGCGaCUGCaugCGCgGCAAG- -5'
17054 3' -53.7 NC_004333.2 + 44849 0.66 0.746204
Target:  5'- cGCGAGACGCUGAagaagauCGCCGcgCg -3'
miRNA:   3'- -UGUUCUGCGACUgcaugc-GCGGCaaG- -5'
17054 3' -53.7 NC_004333.2 + 36228 0.66 0.74514
Target:  5'- uGCAAGGCGCUcGaccgccuggagcgcGCGUaauggcgcGCGCGCCGc-- -3'
miRNA:   3'- -UGUUCUGCGA-C--------------UGCA--------UGCGCGGCaag -5'
17054 3' -53.7 NC_004333.2 + 3780 0.66 0.737659
Target:  5'- gGCAGGcCGUUGuaccGCGcACGCGCCGc-- -3'
miRNA:   3'- -UGUUCuGCGAC----UGCaUGCGCGGCaag -5'
17054 3' -53.7 NC_004333.2 + 44376 0.66 0.736586
Target:  5'- gACAGGuGCGCUGcucggcggcGCGUGCGCgguacaacggccuGCCGggCu -3'
miRNA:   3'- -UGUUC-UGCGAC---------UGCAUGCG-------------CGGCaaG- -5'
17054 3' -53.7 NC_004333.2 + 48090 0.67 0.726879
Target:  5'- gACGAGGCGCaGGCGgcaaccggGCGCGCg---- -3'
miRNA:   3'- -UGUUCUGCGaCUGCa-------UGCGCGgcaag -5'
17054 3' -53.7 NC_004333.2 + 15355 0.67 0.726879
Target:  5'- ---cGGCGCaGACGcGCGCGCUGa-- -3'
miRNA:   3'- uguuCUGCGaCUGCaUGCGCGGCaag -5'
17054 3' -53.7 NC_004333.2 + 2473 0.67 0.725795
Target:  5'- uCGAGAUGCaGGCGUGCGUugugguaGCUGaUCg -3'
miRNA:   3'- uGUUCUGCGaCUGCAUGCG-------CGGCaAG- -5'
17054 3' -53.7 NC_004333.2 + 35803 0.67 0.705034
Target:  5'- gGCGGGGCGCgggcgGGCGcUACGgCGCCc--- -3'
miRNA:   3'- -UGUUCUGCGa----CUGC-AUGC-GCGGcaag -5'
17054 3' -53.7 NC_004333.2 + 10719 0.67 0.705034
Target:  5'- gGCGAG-CGCcgGaAUGUcgGCGCCGUUCg -3'
miRNA:   3'- -UGUUCuGCGa-C-UGCAugCGCGGCAAG- -5'
17054 3' -53.7 NC_004333.2 + 32941 0.67 0.693995
Target:  5'- gGCAGcAgGUaGGCGUGCGCGUCGggCa -3'
miRNA:   3'- -UGUUcUgCGaCUGCAUGCGCGGCaaG- -5'
17054 3' -53.7 NC_004333.2 + 22530 0.67 0.682893
Target:  5'- gGCAAGACGCUuuCGacCGCGCUGa-- -3'
miRNA:   3'- -UGUUCUGCGAcuGCauGCGCGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.