miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17054 5' -55.7 NC_004333.2 + 47912 0.66 0.670741
Target:  5'- cGUGcuCGGCGGCgugACGAccACaUCGAACGg -3'
miRNA:   3'- -UACuuGCCGCCG---UGCU--UG-GGCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 34602 0.66 0.670741
Target:  5'- -cGAuCGGCGGCACGAAagagaaagCCGAcACa- -3'
miRNA:   3'- uaCUuGCCGCCGUGCUUg-------GGCU-UGca -5'
17054 5' -55.7 NC_004333.2 + 20758 0.66 0.670741
Target:  5'- -cGAcGCGGCuGCGC--GCCUGAACGUc -3'
miRNA:   3'- uaCU-UGCCGcCGUGcuUGGGCUUGCA- -5'
17054 5' -55.7 NC_004333.2 + 33354 0.66 0.670741
Target:  5'- -aGAACGGCGcGCcgucguggaACGccugcuGCCCGAucGCGUa -3'
miRNA:   3'- uaCUUGCCGC-CG---------UGCu-----UGGGCU--UGCA- -5'
17054 5' -55.7 NC_004333.2 + 44518 0.66 0.659682
Target:  5'- cUGGACGcCGGC-CGAucacCCCGAGCa- -3'
miRNA:   3'- uACUUGCcGCCGuGCUu---GGGCUUGca -5'
17054 5' -55.7 NC_004333.2 + 12693 0.66 0.659682
Target:  5'- -----aGGCGGCACGcucaccGGCCCGuuGACGg -3'
miRNA:   3'- uacuugCCGCCGUGC------UUGGGC--UUGCa -5'
17054 5' -55.7 NC_004333.2 + 22935 0.66 0.659682
Target:  5'- aAUGGcUGGCucGGCAUuucAACCCGAACGg -3'
miRNA:   3'- -UACUuGCCG--CCGUGc--UUGGGCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 40251 0.66 0.659682
Target:  5'- --cGACaGCGGCGCGAauaucaacuACCCGcAACGc -3'
miRNA:   3'- uacUUGcCGCCGUGCU---------UGGGC-UUGCa -5'
17054 5' -55.7 NC_004333.2 + 19944 0.66 0.658575
Target:  5'- -cGGGCGGCGaGCcgccGCGAgugcuuuGCCCGAcuGCGc -3'
miRNA:   3'- uaCUUGCCGC-CG----UGCU-------UGGGCU--UGCa -5'
17054 5' -55.7 NC_004333.2 + 39869 0.66 0.648597
Target:  5'- --uAGCGG-GGCGCGAGcCCCGcGCGc -3'
miRNA:   3'- uacUUGCCgCCGUGCUU-GGGCuUGCa -5'
17054 5' -55.7 NC_004333.2 + 25122 0.66 0.641938
Target:  5'- -cGAgcACGGCGGCGCGcacguucgcggccuGCCCGAu--- -3'
miRNA:   3'- uaCU--UGCCGCCGUGCu-------------UGGGCUugca -5'
17054 5' -55.7 NC_004333.2 + 20725 0.66 0.637497
Target:  5'- gGUGAugACGGCGcGCGCGcugCCGGACa- -3'
miRNA:   3'- -UACU--UGCCGC-CGUGCuugGGCUUGca -5'
17054 5' -55.7 NC_004333.2 + 39060 0.66 0.637497
Target:  5'- -cGGACGGCGaGUACGcgcGACUCGuGCGc -3'
miRNA:   3'- uaCUUGCCGC-CGUGC---UUGGGCuUGCa -5'
17054 5' -55.7 NC_004333.2 + 9948 0.66 0.637497
Target:  5'- -cGAACGGCgcGGCGCGcuuGCUCGAcuCGg -3'
miRNA:   3'- uaCUUGCCG--CCGUGCu--UGGGCUu-GCa -5'
17054 5' -55.7 NC_004333.2 + 29790 0.66 0.637497
Target:  5'- -cGGACGGCacgaGCAUGAugCCG-GCGa -3'
miRNA:   3'- uaCUUGCCGc---CGUGCUugGGCuUGCa -5'
17054 5' -55.7 NC_004333.2 + 35678 0.66 0.637497
Target:  5'- -cGGACGGCccguaugccGGCaagcuggacGCGAaugacgACCCGGGCGUg -3'
miRNA:   3'- uaCUUGCCG---------CCG---------UGCU------UGGGCUUGCA- -5'
17054 5' -55.7 NC_004333.2 + 9316 0.66 0.615291
Target:  5'- -cGGGCGGCGuucGUAUGGcGCCCGGuACGUg -3'
miRNA:   3'- uaCUUGCCGC---CGUGCU-UGGGCU-UGCA- -5'
17054 5' -55.7 NC_004333.2 + 26075 0.66 0.615291
Target:  5'- -cGcAGCGGCGGCGCuuccGGAUUCGGGCa- -3'
miRNA:   3'- uaC-UUGCCGCCGUG----CUUGGGCUUGca -5'
17054 5' -55.7 NC_004333.2 + 18352 0.67 0.608638
Target:  5'- -cGAcUGGCGGCGCGGcgaucagcaucaacgGCCCGGugacCGUc -3'
miRNA:   3'- uaCUuGCCGCCGUGCU---------------UGGGCUu---GCA- -5'
17054 5' -55.7 NC_004333.2 + 8213 0.67 0.604206
Target:  5'- uUGAACGcugcGCGGCAgGAugacgccgGCCCGcGCGa -3'
miRNA:   3'- uACUUGC----CGCCGUgCU--------UGGGCuUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.