miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17054 5' -55.7 NC_004333.2 + 24298 1.05 0.001493
Target:  5'- gAUGAACGGCGGCACGAACCCGAACGUc -3'
miRNA:   3'- -UACUUGCCGCCGUGCUUGGGCUUGCA- -5'
17054 5' -55.7 NC_004333.2 + 47483 0.77 0.140571
Target:  5'- -cGGGCGGCGGCACGAucgcgcucaCCGAGCa- -3'
miRNA:   3'- uaCUUGCCGCCGUGCUug-------GGCUUGca -5'
17054 5' -55.7 NC_004333.2 + 47624 0.76 0.185249
Target:  5'- -aGAugGGCGGCACGuucGAUCCGcGCGa -3'
miRNA:   3'- uaCUugCCGCCGUGC---UUGGGCuUGCa -5'
17054 5' -55.7 NC_004333.2 + 14267 0.76 0.185249
Target:  5'- -cGAGCGGCGGCACGccUUCGAGCa- -3'
miRNA:   3'- uaCUUGCCGCCGUGCuuGGGCUUGca -5'
17054 5' -55.7 NC_004333.2 + 20878 0.75 0.211996
Target:  5'- -gGuAugGGCGGCgACGAGCCCGGcgcagcGCGUg -3'
miRNA:   3'- uaC-UugCCGCCG-UGCUUGGGCU------UGCA- -5'
17054 5' -55.7 NC_004333.2 + 16539 0.74 0.235727
Target:  5'- -cGAGCGGUGGCGCaacuGCCCGG-CGUc -3'
miRNA:   3'- uaCUUGCCGCCGUGcu--UGGGCUuGCA- -5'
17054 5' -55.7 NC_004333.2 + 28397 0.73 0.26848
Target:  5'- --cAACGcGCGGCACGAuCCCGuGCGUu -3'
miRNA:   3'- uacUUGC-CGCCGUGCUuGGGCuUGCA- -5'
17054 5' -55.7 NC_004333.2 + 23116 0.73 0.275456
Target:  5'- cUGAACGGCGGCACuGAugUUGcGCGc -3'
miRNA:   3'- uACUUGCCGCCGUG-CUugGGCuUGCa -5'
17054 5' -55.7 NC_004333.2 + 24233 0.73 0.289841
Target:  5'- ----cCGGCGGgCACGAACCCGcacuACGUc -3'
miRNA:   3'- uacuuGCCGCC-GUGCUUGGGCu---UGCA- -5'
17054 5' -55.7 NC_004333.2 + 18564 0.73 0.289841
Target:  5'- -gGcGCGGCGGCGaaucCGAACCCGuuCGUg -3'
miRNA:   3'- uaCuUGCCGCCGU----GCUUGGGCuuGCA- -5'
17054 5' -55.7 NC_004333.2 + 15280 0.72 0.304809
Target:  5'- cGUGcuGCGGCGGCGCGGucagcaucaGCaCCGGGCGc -3'
miRNA:   3'- -UACu-UGCCGCCGUGCU---------UG-GGCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 21423 0.71 0.353228
Target:  5'- aAUGGGCaaauugGGCGGCGCaGGACgCGGACGg -3'
miRNA:   3'- -UACUUG------CCGCCGUG-CUUGgGCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 30468 0.71 0.361809
Target:  5'- -cGAcgucACGGCuGCGCcuaccuugucGAGCCCGAGCGUg -3'
miRNA:   3'- uaCU----UGCCGcCGUG----------CUUGGGCUUGCA- -5'
17054 5' -55.7 NC_004333.2 + 23185 0.71 0.361809
Target:  5'- cGUGAcaGGCGGCGCGGACgCaGACGUu -3'
miRNA:   3'- -UACUugCCGCCGUGCUUGgGcUUGCA- -5'
17054 5' -55.7 NC_004333.2 + 18427 0.71 0.370533
Target:  5'- -cGAuCGGCGGCGuCGAcACCgCGAGCGc -3'
miRNA:   3'- uaCUuGCCGCCGU-GCU-UGG-GCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 47717 0.71 0.3794
Target:  5'- -cGGGCGGCGGCACaAACgCCGugaagauuGCGUu -3'
miRNA:   3'- uaCUUGCCGCCGUGcUUG-GGCu-------UGCA- -5'
17054 5' -55.7 NC_004333.2 + 19297 0.7 0.387501
Target:  5'- -cGAGCGcgaucgcGCGGCACGAgcGCuuGAGCGc -3'
miRNA:   3'- uaCUUGC-------CGCCGUGCU--UGggCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 10163 0.7 0.40684
Target:  5'- -cGAACGGguCGGCGCacugGAAgCCGAGCGa -3'
miRNA:   3'- uaCUUGCC--GCCGUG----CUUgGGCUUGCa -5'
17054 5' -55.7 NC_004333.2 + 15425 0.7 0.41626
Target:  5'- uAUGGcCGGCGGCAgCGA-CCUGcGCGUg -3'
miRNA:   3'- -UACUuGCCGCCGU-GCUuGGGCuUGCA- -5'
17054 5' -55.7 NC_004333.2 + 25423 0.7 0.41626
Target:  5'- cGUGccGGCGGCGGC-CGucACgCCGGGCGUg -3'
miRNA:   3'- -UAC--UUGCCGCCGuGCu-UG-GGCUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.