miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17055 3' -53.8 NC_004333.2 + 818 0.66 0.760694
Target:  5'- --cGGGCGGCGUguUGGCUGCuuCCGCCu- -3'
miRNA:   3'- cuaCCUGUCGUA--GUUGAUG--GGCGGcg -5'
17055 3' -53.8 NC_004333.2 + 28740 0.66 0.760694
Target:  5'- --aGGuCGGCcagCAACUGCgcgagCGCCGCg -3'
miRNA:   3'- cuaCCuGUCGua-GUUGAUGg----GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 24197 0.66 0.750131
Target:  5'- aAUGcGACGGUAcCGGCcGCCUGgCCGCc -3'
miRNA:   3'- cUAC-CUGUCGUaGUUGaUGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 17380 0.66 0.750131
Target:  5'- --aGGACGucgagcagcGCAUCgAGCUGCUCGCgcagCGCg -3'
miRNA:   3'- cuaCCUGU---------CGUAG-UUGAUGGGCG----GCG- -5'
17055 3' -53.8 NC_004333.2 + 22236 0.66 0.750131
Target:  5'- -cUGGccgcCGGCAUCGACg--CCGCgCGCa -3'
miRNA:   3'- cuACCu---GUCGUAGUUGaugGGCG-GCG- -5'
17055 3' -53.8 NC_004333.2 + 10841 0.66 0.746938
Target:  5'- --aGGGCGacgcagauucgagcGCGUCGA--GCaCCGCCGCg -3'
miRNA:   3'- cuaCCUGU--------------CGUAGUUgaUG-GGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 23413 0.66 0.739443
Target:  5'- -cUGG-UAGCc-CGGCacgUACCCGCCGCc -3'
miRNA:   3'- cuACCuGUCGuaGUUG---AUGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 27358 0.66 0.739443
Target:  5'- --cGGGCAGgAagCcGCUACCCGuuGUc -3'
miRNA:   3'- cuaCCUGUCgUa-GuUGAUGGGCggCG- -5'
17055 3' -53.8 NC_004333.2 + 30291 0.66 0.739443
Target:  5'- ---cGACGGCG--AGCUGgCCGCCGUc -3'
miRNA:   3'- cuacCUGUCGUagUUGAUgGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 15425 0.66 0.728641
Target:  5'- uAUGGcCGGCggCAGCgACCUGCgCGUg -3'
miRNA:   3'- cUACCuGUCGuaGUUGaUGGGCG-GCG- -5'
17055 3' -53.8 NC_004333.2 + 38371 0.66 0.722111
Target:  5'- --cGGGCAgGCAUacgacggccggaugaCGGCUAUCCGUgGCa -3'
miRNA:   3'- cuaCCUGU-CGUA---------------GUUGAUGGGCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 45124 0.66 0.717738
Target:  5'- --cGGGCAuCGUCAACggcgGCCaGCUGCc -3'
miRNA:   3'- cuaCCUGUcGUAGUUGa---UGGgCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 22074 0.67 0.711153
Target:  5'- --cGGGCGGCuaccccgaaGUCGcCUGCCCgaauccggaagcgccGCCGCu -3'
miRNA:   3'- cuaCCUGUCG---------UAGUuGAUGGG---------------CGGCG- -5'
17055 3' -53.8 NC_004333.2 + 18427 0.67 0.706746
Target:  5'- cGAUcGGCGGCGUCGAC-ACCgCGagCGCg -3'
miRNA:   3'- -CUAcCUGUCGUAGUUGaUGG-GCg-GCG- -5'
17055 3' -53.8 NC_004333.2 + 40523 0.67 0.695677
Target:  5'- -cUGGAUA-CAUCGA--ACCgGCCGCa -3'
miRNA:   3'- cuACCUGUcGUAGUUgaUGGgCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 9787 0.67 0.694566
Target:  5'- cGUGGcCGGCGUCAcgccggcGC-ACCCGacaCGCg -3'
miRNA:   3'- cUACCuGUCGUAGU-------UGaUGGGCg--GCG- -5'
17055 3' -53.8 NC_004333.2 + 18898 0.67 0.684544
Target:  5'- cGAUGGAC-GCgAUCAAagcgGCUCggGCCGCg -3'
miRNA:   3'- -CUACCUGuCG-UAGUUga--UGGG--CGGCG- -5'
17055 3' -53.8 NC_004333.2 + 44586 0.67 0.681193
Target:  5'- cGAUGGuCGGCGUgugggaaaacaccgUAccGCUG-CCGCCGCg -3'
miRNA:   3'- -CUACCuGUCGUA--------------GU--UGAUgGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 14809 0.67 0.673357
Target:  5'- cGAUcGGGCAGCAggcguuccaCGACgGCgCGCCGUu -3'
miRNA:   3'- -CUA-CCUGUCGUa--------GUUGaUGgGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 33403 0.67 0.66213
Target:  5'- cGAUGccuGCGGCGcagCGACUGCgCGCCGa -3'
miRNA:   3'- -CUACc--UGUCGUa--GUUGAUGgGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.