Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17055 | 3' | -53.8 | NC_004333.2 | + | 818 | 0.66 | 0.760694 |
Target: 5'- --cGGGCGGCGUguUGGCUGCuuCCGCCu- -3' miRNA: 3'- cuaCCUGUCGUA--GUUGAUG--GGCGGcg -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 17380 | 0.66 | 0.750131 |
Target: 5'- --aGGACGucgagcagcGCAUCgAGCUGCUCGCgcagCGCg -3' miRNA: 3'- cuaCCUGU---------CGUAG-UUGAUGGGCG----GCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 28740 | 0.66 | 0.760694 |
Target: 5'- --aGGuCGGCcagCAACUGCgcgagCGCCGCg -3' miRNA: 3'- cuaCCuGUCGua-GUUGAUGg----GCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 24197 | 0.66 | 0.750131 |
Target: 5'- aAUGcGACGGUAcCGGCcGCCUGgCCGCc -3' miRNA: 3'- cUAC-CUGUCGUaGUUGaUGGGC-GGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 30291 | 0.66 | 0.739443 |
Target: 5'- ---cGACGGCG--AGCUGgCCGCCGUc -3' miRNA: 3'- cuacCUGUCGUagUUGAUgGGCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 23413 | 0.66 | 0.739443 |
Target: 5'- -cUGG-UAGCc-CGGCacgUACCCGCCGCc -3' miRNA: 3'- cuACCuGUCGuaGUUG---AUGGGCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 45124 | 0.66 | 0.717738 |
Target: 5'- --cGGGCAuCGUCAACggcgGCCaGCUGCc -3' miRNA: 3'- cuaCCUGUcGUAGUUGa---UGGgCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 10841 | 0.66 | 0.746938 |
Target: 5'- --aGGGCGacgcagauucgagcGCGUCGA--GCaCCGCCGCg -3' miRNA: 3'- cuaCCUGU--------------CGUAGUUgaUG-GGCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 22236 | 0.66 | 0.750131 |
Target: 5'- -cUGGccgcCGGCAUCGACg--CCGCgCGCa -3' miRNA: 3'- cuACCu---GUCGUAGUUGaugGGCG-GCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 38371 | 0.66 | 0.722111 |
Target: 5'- --cGGGCAgGCAUacgacggccggaugaCGGCUAUCCGUgGCa -3' miRNA: 3'- cuaCCUGU-CGUA---------------GUUGAUGGGCGgCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 15425 | 0.66 | 0.728641 |
Target: 5'- uAUGGcCGGCggCAGCgACCUGCgCGUg -3' miRNA: 3'- cUACCuGUCGuaGUUGaUGGGCG-GCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 27358 | 0.66 | 0.739443 |
Target: 5'- --cGGGCAGgAagCcGCUACCCGuuGUc -3' miRNA: 3'- cuaCCUGUCgUa-GuUGAUGGGCggCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 33403 | 0.67 | 0.66213 |
Target: 5'- cGAUGccuGCGGCGcagCGACUGCgCGCCGa -3' miRNA: 3'- -CUACc--UGUCGUa--GUUGAUGgGCGGCg -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 18427 | 0.67 | 0.706746 |
Target: 5'- cGAUcGGCGGCGUCGAC-ACCgCGagCGCg -3' miRNA: 3'- -CUAcCUGUCGUAGUUGaUGG-GCg-GCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 40523 | 0.67 | 0.695677 |
Target: 5'- -cUGGAUA-CAUCGA--ACCgGCCGCa -3' miRNA: 3'- cuACCUGUcGUAGUUgaUGGgCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 44586 | 0.67 | 0.681193 |
Target: 5'- cGAUGGuCGGCGUgugggaaaacaccgUAccGCUG-CCGCCGCg -3' miRNA: 3'- -CUACCuGUCGUA--------------GU--UGAUgGGCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 22074 | 0.67 | 0.711153 |
Target: 5'- --cGGGCGGCuaccccgaaGUCGcCUGCCCgaauccggaagcgccGCCGCu -3' miRNA: 3'- cuaCCUGUCG---------UAGUuGAUGGG---------------CGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 9225 | 0.67 | 0.66213 |
Target: 5'- --cGGGCaugaAGCggCGAUUGCCgGUCGCg -3' miRNA: 3'- cuaCCUG----UCGuaGUUGAUGGgCGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 18898 | 0.67 | 0.684544 |
Target: 5'- cGAUGGAC-GCgAUCAAagcgGCUCggGCCGCg -3' miRNA: 3'- -CUACCUGuCG-UAGUUga--UGGG--CGGCG- -5' |
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17055 | 3' | -53.8 | NC_004333.2 | + | 9787 | 0.67 | 0.694566 |
Target: 5'- cGUGGcCGGCGUCAcgccggcGC-ACCCGacaCGCg -3' miRNA: 3'- cUACCuGUCGUAGU-------UGaUGGGCg--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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