miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17055 3' -53.8 NC_004333.2 + 23283 1.11 0.000855
Target:  5'- uGAUGGACAGCAUCAACUACCCGCCGCc -3'
miRNA:   3'- -CUACCUGUCGUAGUUGAUGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 28547 0.78 0.172149
Target:  5'- --cGGcCAGCGUCGGCcgcGCUCGCCGCg -3'
miRNA:   3'- cuaCCuGUCGUAGUUGa--UGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 39239 0.75 0.251912
Target:  5'- cGAUGGACAGCGcCGGCgcgaacgaaGCCgCGUCGCg -3'
miRNA:   3'- -CUACCUGUCGUaGUUGa--------UGG-GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 21574 0.74 0.287042
Target:  5'- -cUGGACAGCAacgcuuacgCGAC-GCCCGcCCGCa -3'
miRNA:   3'- cuACCUGUCGUa--------GUUGaUGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 16650 0.74 0.309913
Target:  5'- cGUGcGACAGCAcuUCGAcCUGCCCGgUGCu -3'
miRNA:   3'- cUAC-CUGUCGU--AGUU-GAUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 47585 0.73 0.334146
Target:  5'- cGGUGGACccgcaGGCGuucauUCAGCUGCgCGUCGCc -3'
miRNA:   3'- -CUACCUG-----UCGU-----AGUUGAUGgGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 43446 0.73 0.351057
Target:  5'- --cGGACGcgcGCAUCGcgcGCUugCgCGCCGCa -3'
miRNA:   3'- cuaCCUGU---CGUAGU---UGAugG-GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 40249 0.73 0.359738
Target:  5'- --gGcGACAGCGgcgcgaauaUCAACUACCCGCaaCGCc -3'
miRNA:   3'- cuaC-CUGUCGU---------AGUUGAUGGGCG--GCG- -5'
17055 3' -53.8 NC_004333.2 + 28225 0.73 0.368567
Target:  5'- --cGGGCAaaGCAcUCGACggcgGCUCGCCGCc -3'
miRNA:   3'- cuaCCUGU--CGU-AGUUGa---UGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 7427 0.72 0.395933
Target:  5'- cGAUGcgcucGAuCAGCAUCGcguucaggagcgACUugCCGCCGCc -3'
miRNA:   3'- -CUAC-----CU-GUCGUAGU------------UGAugGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 39955 0.71 0.424576
Target:  5'- --cGGGcCGGCGUCAu---CCUGCCGCg -3'
miRNA:   3'- cuaCCU-GUCGUAGUugauGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 38653 0.71 0.427508
Target:  5'- --cGGGCGGCAcgggcaagucguacuUCGucgagcaGCUGgCCGCCGCg -3'
miRNA:   3'- cuaCCUGUCGU---------------AGU-------UGAUgGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 20880 0.71 0.434395
Target:  5'- uAUGGGCGGCGaCGA--GCCCGgCGCa -3'
miRNA:   3'- cUACCUGUCGUaGUUgaUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 34396 0.71 0.434395
Target:  5'- aGUGGACGuGag-CAACUACaCGCCGCg -3'
miRNA:   3'- cUACCUGU-CguaGUUGAUGgGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 6837 0.71 0.444344
Target:  5'- gGcgGGGCAcuCGUCGGCUACCgGCgGCu -3'
miRNA:   3'- -CuaCCUGUc-GUAGUUGAUGGgCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 35153 0.71 0.454421
Target:  5'- uGAUGGACcucgcgcaGGCGUUGA-UGCCCGgCGCg -3'
miRNA:   3'- -CUACCUG--------UCGUAGUUgAUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 15295 0.71 0.474935
Target:  5'- --cGGuCAGCAUCAGC-ACCgGgCGCu -3'
miRNA:   3'- cuaCCuGUCGUAGUUGaUGGgCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 33156 0.71 0.474935
Target:  5'- aGGUGGcgaguuucGCGGCGUCGGCgucggcgGCCCGCUa- -3'
miRNA:   3'- -CUACC--------UGUCGUAGUUGa------UGGGCGGcg -5'
17055 3' -53.8 NC_004333.2 + 41822 0.7 0.495903
Target:  5'- ---cGACGGCA-CGACggcGCCCGgCCGCg -3'
miRNA:   3'- cuacCUGUCGUaGUUGa--UGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 14592 0.7 0.495903
Target:  5'- --gGGACAGCGgcuUCGGCUGCUgGuuGUu -3'
miRNA:   3'- cuaCCUGUCGU---AGUUGAUGGgCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.