miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17055 3' -53.8 NC_004333.2 + 33403 0.67 0.66213
Target:  5'- cGAUGccuGCGGCGcagCGACUGCgCGCCGa -3'
miRNA:   3'- -CUACc--UGUCGUa--GUUGAUGgGCGGCg -5'
17055 3' -53.8 NC_004333.2 + 45687 0.68 0.650874
Target:  5'- --cGGGCGcGCgAUCAGCUACCacaaCGCaCGCc -3'
miRNA:   3'- cuaCCUGU-CG-UAGUUGAUGG----GCG-GCG- -5'
17055 3' -53.8 NC_004333.2 + 3838 0.68 0.6396
Target:  5'- --cGGGCAG-AUCgugauagccGugUugCCGCCGCa -3'
miRNA:   3'- cuaCCUGUCgUAG---------UugAugGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 19138 0.68 0.638472
Target:  5'- cGUGGGCGGCGcggugcUCGcgcugguuaucguGCUAgCCGCgCGCg -3'
miRNA:   3'- cUACCUGUCGU------AGU-------------UGAUgGGCG-GCG- -5'
17055 3' -53.8 NC_004333.2 + 18364 0.68 0.628318
Target:  5'- --cGGcgauCAGCAUCAACgGCCCGgugaCCGUc -3'
miRNA:   3'- cuaCCu---GUCGUAGUUGaUGGGC----GGCG- -5'
17055 3' -53.8 NC_004333.2 + 33446 0.68 0.628318
Target:  5'- --cGGAuCAG-AUCGGCUacaaucccgACCUGCCGCu -3'
miRNA:   3'- cuaCCU-GUCgUAGUUGA---------UGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 41235 0.68 0.61704
Target:  5'- cGAUGGuucaGGCuUCGACUggcGCCCG-CGCa -3'
miRNA:   3'- -CUACCug--UCGuAGUUGA---UGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 37338 0.68 0.61704
Target:  5'- --cGuGACAGCGU--ACUugCgGCCGCu -3'
miRNA:   3'- cuaC-CUGUCGUAguUGAugGgCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 16532 0.68 0.61704
Target:  5'- --cGGGCcgcgAGCGguggcgCAACUGCCCGgCGUc -3'
miRNA:   3'- cuaCCUG----UCGUa-----GUUGAUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 34813 0.68 0.61704
Target:  5'- ----cAUAGCAUCGAaggUGCCCGCCaGCa -3'
miRNA:   3'- cuaccUGUCGUAGUUg--AUGGGCGG-CG- -5'
17055 3' -53.8 NC_004333.2 + 41290 0.68 0.614786
Target:  5'- --aGGGCGGCGacuUCGACgaggccgagcucGCCCGgCGCg -3'
miRNA:   3'- cuaCCUGUCGU---AGUUGa-----------UGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 44647 0.68 0.605776
Target:  5'- aAUGGACAugcGCAUCAACca-UCGCgGCa -3'
miRNA:   3'- cUACCUGU---CGUAGUUGaugGGCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 29115 0.68 0.605776
Target:  5'- aAUGGAUAGCcggcggacgGUCAGC-AUCCGCCa- -3'
miRNA:   3'- cUACCUGUCG---------UAGUUGaUGGGCGGcg -5'
17055 3' -53.8 NC_004333.2 + 45344 0.68 0.594535
Target:  5'- cGAUGGACauuuacAGCAUCGAaUACgaUGCCGUg -3'
miRNA:   3'- -CUACCUG------UCGUAGUUgAUGg-GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 33952 0.69 0.583328
Target:  5'- ---aGACGGCAcCGugaUGCCCGUCGCg -3'
miRNA:   3'- cuacCUGUCGUaGUug-AUGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 9605 0.69 0.565489
Target:  5'- --cGGcGCGGCAUCGgccgguugcgcaccgGCUGCCgGCgGCg -3'
miRNA:   3'- cuaCC-UGUCGUAGU---------------UGAUGGgCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 33021 0.69 0.549998
Target:  5'- --gGGAuCGGCGUCGAUcGCUuugagCGCCGCa -3'
miRNA:   3'- cuaCCU-GUCGUAGUUGaUGG-----GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 9795 0.69 0.546696
Target:  5'- --cGGAUAGcCGUCAuccggccgucguauGcCUGCCCGuCCGCg -3'
miRNA:   3'- cuaCCUGUC-GUAGU--------------U-GAUGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 39131 0.7 0.528105
Target:  5'- --cGcGACGGCAUCGGCUugCCGaucaCCGa -3'
miRNA:   3'- cuaC-CUGUCGUAGUUGAugGGC----GGCg -5'
17055 3' -53.8 NC_004333.2 + 38754 0.7 0.517279
Target:  5'- --cGGACGGCGUgcGCaGCCCGCaggGCa -3'
miRNA:   3'- cuaCCUGUCGUAguUGaUGGGCGg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.