miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17055 3' -53.8 NC_004333.2 + 818 0.66 0.760694
Target:  5'- --cGGGCGGCGUguUGGCUGCuuCCGCCu- -3'
miRNA:   3'- cuaCCUGUCGUA--GUUGAUG--GGCGGcg -5'
17055 3' -53.8 NC_004333.2 + 3838 0.68 0.6396
Target:  5'- --cGGGCAG-AUCgugauagccGugUugCCGCCGCa -3'
miRNA:   3'- cuaCCUGUCgUAG---------UugAugGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 5204 0.7 0.506543
Target:  5'- --aGGcGCGGCGUCGGCa--CCGUCGCa -3'
miRNA:   3'- cuaCC-UGUCGUAGUUGaugGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 6837 0.71 0.444344
Target:  5'- gGcgGGGCAcuCGUCGGCUACCgGCgGCu -3'
miRNA:   3'- -CuaCCUGUc-GUAGUUGAUGGgCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 7427 0.72 0.395933
Target:  5'- cGAUGcgcucGAuCAGCAUCGcguucaggagcgACUugCCGCCGCc -3'
miRNA:   3'- -CUAC-----CU-GUCGUAGU------------UGAugGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 9225 0.67 0.66213
Target:  5'- --cGGGCaugaAGCggCGAUUGCCgGUCGCg -3'
miRNA:   3'- cuaCCUG----UCGuaGUUGAUGGgCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 9605 0.69 0.565489
Target:  5'- --cGGcGCGGCAUCGgccgguugcgcaccgGCUGCCgGCgGCg -3'
miRNA:   3'- cuaCC-UGUCGUAGU---------------UGAUGGgCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 9787 0.67 0.694566
Target:  5'- cGUGGcCGGCGUCAcgccggcGC-ACCCGacaCGCg -3'
miRNA:   3'- cUACCuGUCGUAGU-------UGaUGGGCg--GCG- -5'
17055 3' -53.8 NC_004333.2 + 9795 0.69 0.546696
Target:  5'- --cGGAUAGcCGUCAuccggccgucguauGcCUGCCCGuCCGCg -3'
miRNA:   3'- cuaCCUGUC-GUAGU--------------U-GAUGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 10841 0.66 0.746938
Target:  5'- --aGGGCGacgcagauucgagcGCGUCGA--GCaCCGCCGCg -3'
miRNA:   3'- cuaCCUGU--------------CGUAGUUgaUG-GGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 14592 0.7 0.495903
Target:  5'- --gGGACAGCGgcuUCGGCUGCUgGuuGUu -3'
miRNA:   3'- cuaCCUGUCGU---AGUUGAUGGgCggCG- -5'
17055 3' -53.8 NC_004333.2 + 14809 0.67 0.673357
Target:  5'- cGAUcGGGCAGCAggcguuccaCGACgGCgCGCCGUu -3'
miRNA:   3'- -CUA-CCUGUCGUa--------GUUGaUGgGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 15295 0.71 0.474935
Target:  5'- --cGGuCAGCAUCAGC-ACCgGgCGCu -3'
miRNA:   3'- cuaCCuGUCGUAGUUGaUGGgCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 15425 0.66 0.728641
Target:  5'- uAUGGcCGGCggCAGCgACCUGCgCGUg -3'
miRNA:   3'- cUACCuGUCGuaGUUGaUGGGCG-GCG- -5'
17055 3' -53.8 NC_004333.2 + 16532 0.68 0.61704
Target:  5'- --cGGGCcgcgAGCGguggcgCAACUGCCCGgCGUc -3'
miRNA:   3'- cuaCCUG----UCGUa-----GUUGAUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 16650 0.74 0.309913
Target:  5'- cGUGcGACAGCAcuUCGAcCUGCCCGgUGCu -3'
miRNA:   3'- cUAC-CUGUCGU--AGUU-GAUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 17380 0.66 0.750131
Target:  5'- --aGGACGucgagcagcGCAUCgAGCUGCUCGCgcagCGCg -3'
miRNA:   3'- cuaCCUGU---------CGUAG-UUGAUGGGCG----GCG- -5'
17055 3' -53.8 NC_004333.2 + 18364 0.68 0.628318
Target:  5'- --cGGcgauCAGCAUCAACgGCCCGgugaCCGUc -3'
miRNA:   3'- cuaCCu---GUCGUAGUUGaUGGGC----GGCG- -5'
17055 3' -53.8 NC_004333.2 + 18427 0.67 0.706746
Target:  5'- cGAUcGGCGGCGUCGAC-ACCgCGagCGCg -3'
miRNA:   3'- -CUAcCUGUCGUAGUUGaUGG-GCg-GCG- -5'
17055 3' -53.8 NC_004333.2 + 18898 0.67 0.684544
Target:  5'- cGAUGGAC-GCgAUCAAagcgGCUCggGCCGCg -3'
miRNA:   3'- -CUACCUGuCG-UAGUUga--UGGG--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.