miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17055 3' -53.8 NC_004333.2 + 21574 0.74 0.287042
Target:  5'- -cUGGACAGCAacgcuuacgCGAC-GCCCGcCCGCa -3'
miRNA:   3'- cuACCUGUCGUa--------GUUGaUGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 45344 0.68 0.594535
Target:  5'- cGAUGGACauuuacAGCAUCGAaUACgaUGCCGUg -3'
miRNA:   3'- -CUACCUG------UCGUAGUUgAUGg-GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 29115 0.68 0.605776
Target:  5'- aAUGGAUAGCcggcggacgGUCAGC-AUCCGCCa- -3'
miRNA:   3'- cUACCUGUCG---------UAGUUGaUGGGCGGcg -5'
17055 3' -53.8 NC_004333.2 + 28740 0.66 0.760694
Target:  5'- --aGGuCGGCcagCAACUGCgcgagCGCCGCg -3'
miRNA:   3'- cuaCCuGUCGua-GUUGAUGg----GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 38653 0.71 0.427508
Target:  5'- --cGGGCGGCAcgggcaagucguacuUCGucgagcaGCUGgCCGCCGCg -3'
miRNA:   3'- cuaCCUGUCGU---------------AGU-------UGAUgGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 20880 0.71 0.434395
Target:  5'- uAUGGGCGGCGaCGA--GCCCGgCGCa -3'
miRNA:   3'- cUACCUGUCGUaGUUgaUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 15295 0.71 0.474935
Target:  5'- --cGGuCAGCAUCAGC-ACCgGgCGCu -3'
miRNA:   3'- cuaCCuGUCGUAGUUGaUGGgCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 41822 0.7 0.495903
Target:  5'- ---cGACGGCA-CGACggcGCCCGgCCGCg -3'
miRNA:   3'- cuacCUGUCGUaGUUGa--UGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 5204 0.7 0.506543
Target:  5'- --aGGcGCGGCGUCGGCa--CCGUCGCa -3'
miRNA:   3'- cuaCC-UGUCGUAGUUGaugGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 33952 0.69 0.583328
Target:  5'- ---aGACGGCAcCGugaUGCCCGUCGCg -3'
miRNA:   3'- cuacCUGUCGUaGUug-AUGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 9795 0.69 0.546696
Target:  5'- --cGGAUAGcCGUCAuccggccgucguauGcCUGCCCGuCCGCg -3'
miRNA:   3'- cuaCCUGUC-GUAGU--------------U-GAUGGGC-GGCG- -5'
17055 3' -53.8 NC_004333.2 + 26702 0.7 0.506543
Target:  5'- uAUGGAU---GUCGA-UGCCCGCCGCg -3'
miRNA:   3'- cUACCUGucgUAGUUgAUGGGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 16650 0.74 0.309913
Target:  5'- cGUGcGACAGCAcuUCGAcCUGCCCGgUGCu -3'
miRNA:   3'- cUAC-CUGUCGU--AGUU-GAUGGGCgGCG- -5'
17055 3' -53.8 NC_004333.2 + 33021 0.69 0.549998
Target:  5'- --gGGAuCGGCGUCGAUcGCUuugagCGCCGCa -3'
miRNA:   3'- cuaCCU-GUCGUAGUUGaUGG-----GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 47585 0.73 0.334146
Target:  5'- cGGUGGACccgcaGGCGuucauUCAGCUGCgCGUCGCc -3'
miRNA:   3'- -CUACCUG-----UCGU-----AGUUGAUGgGCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 41928 0.7 0.495903
Target:  5'- --cGGACAGCGaggggugCGGCUACCUGaacgaCGCu -3'
miRNA:   3'- cuaCCUGUCGUa------GUUGAUGGGCg----GCG- -5'
17055 3' -53.8 NC_004333.2 + 9605 0.69 0.565489
Target:  5'- --cGGcGCGGCAUCGgccgguugcgcaccgGCUGCCgGCgGCg -3'
miRNA:   3'- cuaCC-UGUCGUAGU---------------UGAUGGgCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 44647 0.68 0.605776
Target:  5'- aAUGGACAugcGCAUCAACca-UCGCgGCa -3'
miRNA:   3'- cUACCUGU---CGUAGUUGaugGGCGgCG- -5'
17055 3' -53.8 NC_004333.2 + 43446 0.73 0.351057
Target:  5'- --cGGACGcgcGCAUCGcgcGCUugCgCGCCGCa -3'
miRNA:   3'- cuaCCUGU---CGUAGU---UGAugG-GCGGCG- -5'
17055 3' -53.8 NC_004333.2 + 6837 0.71 0.444344
Target:  5'- gGcgGGGCAcuCGUCGGCUACCgGCgGCu -3'
miRNA:   3'- -CuaCCUGUc-GUAGUUGAUGGgCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.