miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17055 5' -60.1 NC_004333.2 + 7516 0.66 0.447124
Target:  5'- aGUGCgCCGaaCaGUUCGU-CGGCCGCu -3'
miRNA:   3'- -UAUGgGGCacGcCAAGCAcGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 35796 0.66 0.428175
Target:  5'- -cGCgCCGgGCGGggCGcggGCGGgCGCu -3'
miRNA:   3'- uaUGgGGCaCGCCaaGCa--CGCCgGCG- -5'
17055 5' -60.1 NC_004333.2 + 45529 0.66 0.418881
Target:  5'- -cGCCCCGcauucgaGCGGUg---GUGGUCGCu -3'
miRNA:   3'- uaUGGGGCa------CGCCAagcaCGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 7782 0.66 0.400664
Target:  5'- uUugCCCGUcuucaaccG-GGUUCGaGuCGGCCGCg -3'
miRNA:   3'- uAugGGGCA--------CgCCAAGCaC-GCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 23942 0.67 0.391747
Target:  5'- -gACgUaGUGCGGUUCGUGCccGCCGg -3'
miRNA:   3'- uaUGgGgCACGCCAAGCACGc-CGGCg -5'
17055 5' -60.1 NC_004333.2 + 2761 0.67 0.374306
Target:  5'- -gGCCgCCGUGcCGGUcgcguUCGUcacgaccgugaaGCGGuuGCg -3'
miRNA:   3'- uaUGG-GGCAC-GCCA-----AGCA------------CGCCggCG- -5'
17055 5' -60.1 NC_004333.2 + 27318 0.67 0.365785
Target:  5'- cAUACCuuGUG-GcGUUCGagcaggaugcGCGGCCGCc -3'
miRNA:   3'- -UAUGGggCACgC-CAAGCa---------CGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 25628 0.67 0.357399
Target:  5'- aGUugCCCuUGCGGcgUCGUcagcGCGGUCGa -3'
miRNA:   3'- -UAugGGGcACGCCa-AGCA----CGCCGGCg -5'
17055 5' -60.1 NC_004333.2 + 41627 0.67 0.357399
Target:  5'- cGUGCUCUG-GCGGcagauugUCGggcgcgggcUGCGGCCGUa -3'
miRNA:   3'- -UAUGGGGCaCGCCa------AGC---------ACGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 2316 0.67 0.35491
Target:  5'- -cGCCCgCGUugaacugGCGGaaugcgagcacCGUGCGGCCGUu -3'
miRNA:   3'- uaUGGG-GCA-------CGCCaa---------GCACGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 32247 0.67 0.349149
Target:  5'- uUGCCCCGauugugGCGGcgauggcacCGUggGCGGUCGCa -3'
miRNA:   3'- uAUGGGGCa-----CGCCaa-------GCA--CGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 21640 0.68 0.316756
Target:  5'- -gGCUCCGUGCaGUUCGccgcaccUGuCGGCgCGCc -3'
miRNA:   3'- uaUGGGGCACGcCAAGC-------AC-GCCG-GCG- -5'
17055 5' -60.1 NC_004333.2 + 683 0.69 0.295243
Target:  5'- ---gCCCGUGCucGGUgagcgcgaUCGUGCcGCCGCc -3'
miRNA:   3'- uaugGGGCACG--CCA--------AGCACGcCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 9256 0.69 0.287386
Target:  5'- -cGCCgCGUGCGGcauagccUUCGUGCGGauuCgGCu -3'
miRNA:   3'- uaUGGgGCACGCC-------AAGCACGCC---GgCG- -5'
17055 5' -60.1 NC_004333.2 + 6831 0.7 0.254382
Target:  5'- -cACUCCG-GCGGggcacucgUCGgcuaccgGCGGCUGCg -3'
miRNA:   3'- uaUGGGGCaCGCCa-------AGCa------CGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 28410 0.7 0.254382
Target:  5'- -gAUCCCGUGC-GUUgGaGCGGCCGa -3'
miRNA:   3'- uaUGGGGCACGcCAAgCaCGCCGGCg -5'
17055 5' -60.1 NC_004333.2 + 247 0.7 0.254382
Target:  5'- -cACgCCGUGCcGUUCGaUGUGGUCGUc -3'
miRNA:   3'- uaUGgGGCACGcCAAGC-ACGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 22176 0.75 0.108673
Target:  5'- -cGCCggcggcggCCGgcgGCGGUUCG-GCGGCUGCg -3'
miRNA:   3'- uaUGG--------GGCa--CGCCAAGCaCGCCGGCG- -5'
17055 5' -60.1 NC_004333.2 + 23319 1.08 0.00034
Target:  5'- aAUACCCCGUGCGGUUCGUGCGGCCGCc -3'
miRNA:   3'- -UAUGGGGCACGCCAAGCACGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.