Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17055 | 5' | -60.1 | NC_004333.2 | + | 7516 | 0.66 | 0.447124 |
Target: 5'- aGUGCgCCGaaCaGUUCGU-CGGCCGCu -3' miRNA: 3'- -UAUGgGGCacGcCAAGCAcGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 45529 | 0.66 | 0.418881 |
Target: 5'- -cGCCCCGcauucgaGCGGUg---GUGGUCGCu -3' miRNA: 3'- uaUGGGGCa------CGCCAagcaCGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 7782 | 0.66 | 0.400664 |
Target: 5'- uUugCCCGUcuucaaccG-GGUUCGaGuCGGCCGCg -3' miRNA: 3'- uAugGGGCA--------CgCCAAGCaC-GCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 35796 | 0.66 | 0.428175 |
Target: 5'- -cGCgCCGgGCGGggCGcggGCGGgCGCu -3' miRNA: 3'- uaUGgGGCaCGCCaaGCa--CGCCgGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 27318 | 0.67 | 0.365785 |
Target: 5'- cAUACCuuGUG-GcGUUCGagcaggaugcGCGGCCGCc -3' miRNA: 3'- -UAUGGggCACgC-CAAGCa---------CGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 32247 | 0.67 | 0.349149 |
Target: 5'- uUGCCCCGauugugGCGGcgauggcacCGUggGCGGUCGCa -3' miRNA: 3'- uAUGGGGCa-----CGCCaa-------GCA--CGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 23942 | 0.67 | 0.391747 |
Target: 5'- -gACgUaGUGCGGUUCGUGCccGCCGg -3' miRNA: 3'- uaUGgGgCACGCCAAGCACGc-CGGCg -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 2761 | 0.67 | 0.374306 |
Target: 5'- -gGCCgCCGUGcCGGUcgcguUCGUcacgaccgugaaGCGGuuGCg -3' miRNA: 3'- uaUGG-GGCAC-GCCA-----AGCA------------CGCCggCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 41627 | 0.67 | 0.357399 |
Target: 5'- cGUGCUCUG-GCGGcagauugUCGggcgcgggcUGCGGCCGUa -3' miRNA: 3'- -UAUGGGGCaCGCCa------AGC---------ACGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 25628 | 0.67 | 0.357399 |
Target: 5'- aGUugCCCuUGCGGcgUCGUcagcGCGGUCGa -3' miRNA: 3'- -UAugGGGcACGCCa-AGCA----CGCCGGCg -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 2316 | 0.67 | 0.35491 |
Target: 5'- -cGCCCgCGUugaacugGCGGaaugcgagcacCGUGCGGCCGUu -3' miRNA: 3'- uaUGGG-GCA-------CGCCaa---------GCACGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 21640 | 0.68 | 0.316756 |
Target: 5'- -gGCUCCGUGCaGUUCGccgcaccUGuCGGCgCGCc -3' miRNA: 3'- uaUGGGGCACGcCAAGC-------AC-GCCG-GCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 683 | 0.69 | 0.295243 |
Target: 5'- ---gCCCGUGCucGGUgagcgcgaUCGUGCcGCCGCc -3' miRNA: 3'- uaugGGGCACG--CCA--------AGCACGcCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 9256 | 0.69 | 0.287386 |
Target: 5'- -cGCCgCGUGCGGcauagccUUCGUGCGGauuCgGCu -3' miRNA: 3'- uaUGGgGCACGCC-------AAGCACGCC---GgCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 6831 | 0.7 | 0.254382 |
Target: 5'- -cACUCCG-GCGGggcacucgUCGgcuaccgGCGGCUGCg -3' miRNA: 3'- uaUGGGGCaCGCCa-------AGCa------CGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 28410 | 0.7 | 0.254382 |
Target: 5'- -gAUCCCGUGC-GUUgGaGCGGCCGa -3' miRNA: 3'- uaUGGGGCACGcCAAgCaCGCCGGCg -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 247 | 0.7 | 0.254382 |
Target: 5'- -cACgCCGUGCcGUUCGaUGUGGUCGUc -3' miRNA: 3'- uaUGgGGCACGcCAAGC-ACGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 22176 | 0.75 | 0.108673 |
Target: 5'- -cGCCggcggcggCCGgcgGCGGUUCG-GCGGCUGCg -3' miRNA: 3'- uaUGG--------GGCa--CGCCAAGCaCGCCGGCG- -5' |
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17055 | 5' | -60.1 | NC_004333.2 | + | 23319 | 1.08 | 0.00034 |
Target: 5'- aAUACCCCGUGCGGUUCGUGCGGCCGCc -3' miRNA: 3'- -UAUGGGGCACGCCAAGCACGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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