miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17056 3' -61 NC_004333.2 + 23372 0.66 0.412111
Target:  5'- aCCGUGC-CGcCCGUcaGUCCGGAcagGGCg -3'
miRNA:   3'- cGGCACGaGC-GGCA--CGGGCCUca-CUG- -5'
17056 3' -61 NC_004333.2 + 19705 0.66 0.368363
Target:  5'- -aUGcUGCUCG-CGUGCUCGGcgcuGGUGGCg -3'
miRNA:   3'- cgGC-ACGAGCgGCACGGGCC----UCACUG- -5'
17056 3' -61 NC_004333.2 + 684 0.67 0.355053
Target:  5'- cCCGUGCUCggugagcgcgaucguGCCGccGCCCGcGAgcgccGUGGCg -3'
miRNA:   3'- cGGCACGAG---------------CGGCa-CGGGC-CU-----CACUG- -5'
17056 3' -61 NC_004333.2 + 27299 0.67 0.351779
Target:  5'- cGCCGgGCUCGUCGccGCCCauaccuuGUGGCg -3'
miRNA:   3'- -CGGCaCGAGCGGCa-CGGGccu----CACUG- -5'
17056 3' -61 NC_004333.2 + 38777 0.68 0.283831
Target:  5'- cGCCGaGCUUGCCGaaaUGUCCGGcauGG-GGCg -3'
miRNA:   3'- -CGGCaCGAGCGGC---ACGGGCC---UCaCUG- -5'
17056 3' -61 NC_004333.2 + 38611 0.69 0.250787
Target:  5'- aGCCGgGCgCGCCGcUGCCCGuGGUGcCc -3'
miRNA:   3'- -CGGCaCGaGCGGC-ACGGGCcUCACuG- -5'
17056 3' -61 NC_004333.2 + 1862 0.69 0.250787
Target:  5'- uGUCGUGCgguucugacgCGCCuG-GCCCGGAuUGGCg -3'
miRNA:   3'- -CGGCACGa---------GCGG-CaCGGGCCUcACUG- -5'
17056 3' -61 NC_004333.2 + 30056 0.69 0.238484
Target:  5'- uGCCGUGCUCGaaGUuguucgcauGCCCgaaugcGGAcGUGGCg -3'
miRNA:   3'- -CGGCACGAGCggCA---------CGGG------CCU-CACUG- -5'
17056 3' -61 NC_004333.2 + 8919 0.69 0.238484
Target:  5'- cGCgCGUGCgccUGCCGgccGCUCGGGGUG-Cg -3'
miRNA:   3'- -CG-GCACGa--GCGGCa--CGGGCCUCACuG- -5'
17056 3' -61 NC_004333.2 + 47903 0.7 0.232524
Target:  5'- cGCCGUGa---CCGUGCUCGGcggcGUGACg -3'
miRNA:   3'- -CGGCACgagcGGCACGGGCCu---CACUG- -5'
17056 3' -61 NC_004333.2 + 37675 0.7 0.199357
Target:  5'- cCCGacccGCUCGUCGgccgGCCCGGcgcGUGGCg -3'
miRNA:   3'- cGGCa---CGAGCGGCa---CGGGCCu--CACUG- -5'
17056 3' -61 NC_004333.2 + 3643 0.73 0.130405
Target:  5'- -aCGUGCgCGCgaaGUGCUCGGGGUGAUc -3'
miRNA:   3'- cgGCACGaGCGg--CACGGGCCUCACUG- -5'
17056 3' -61 NC_004333.2 + 16855 0.74 0.120211
Target:  5'- gGCCGgcauUGCgggCGCCGUGCUCGGcGUcGGCg -3'
miRNA:   3'- -CGGC----ACGa--GCGGCACGGGCCuCA-CUG- -5'
17056 3' -61 NC_004333.2 + 28558 0.75 0.102012
Target:  5'- gGCCGcGCUCGCCGcGCUCGccGUGACc -3'
miRNA:   3'- -CGGCaCGAGCGGCaCGGGCcuCACUG- -5'
17056 3' -61 NC_004333.2 + 23068 1.11 0.000161
Target:  5'- cGCCGUGCUCGCCGUGCCCGGAGUGACg -3'
miRNA:   3'- -CGGCACGAGCGGCACGGGCCUCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.