miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17056 5' -51.6 NC_004333.2 + 30395 0.66 0.877314
Target:  5'- cACGUCUccuaacagcuuGCAAUuacCGcGCGGCGcCGGCu -3'
miRNA:   3'- -UGCAGA-----------UGUUGuu-GC-CGUCGCuGUCG- -5'
17056 5' -51.6 NC_004333.2 + 5540 0.66 0.877314
Target:  5'- cCGUggcCGGCGACGGCuuggcGCGAguGCa -3'
miRNA:   3'- uGCAgauGUUGUUGCCGu----CGCUguCG- -5'
17056 5' -51.6 NC_004333.2 + 32143 0.66 0.877314
Target:  5'- cACGUCgaacgcgGCGACuguCGGCAG-GcCGGCc -3'
miRNA:   3'- -UGCAGa------UGUUGuu-GCCGUCgCuGUCG- -5'
17056 5' -51.6 NC_004333.2 + 15191 0.66 0.877314
Target:  5'- cGCGUUcGCAauccgcACGGcCGGCAGCaggccggucaGACGGCc -3'
miRNA:   3'- -UGCAGaUGU------UGUU-GCCGUCG----------CUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 37294 0.66 0.877314
Target:  5'- gAUGUCgaagGCGACGcguuccaguCGGUcGCGGCGGUg -3'
miRNA:   3'- -UGCAGa---UGUUGUu--------GCCGuCGCUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 13901 0.66 0.877314
Target:  5'- cACGggCUGC-GCGGCGGCugccguGGCGAUcguGGCc -3'
miRNA:   3'- -UGCa-GAUGuUGUUGCCG------UCGCUG---UCG- -5'
17056 5' -51.6 NC_004333.2 + 20812 0.66 0.877314
Target:  5'- -gGUCga-GACAACgGGUAGCGGCuuccuGCc -3'
miRNA:   3'- ugCAGaugUUGUUG-CCGUCGCUGu----CG- -5'
17056 5' -51.6 NC_004333.2 + 47700 0.66 0.869193
Target:  5'- cAUG-CUGCcGACAAUcGCgGGCGGCGGCa -3'
miRNA:   3'- -UGCaGAUG-UUGUUGcCG-UCGCUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 45169 0.66 0.869193
Target:  5'- cGCG-CUACGucGCGGCGGaC-GCGcCGGCg -3'
miRNA:   3'- -UGCaGAUGU--UGUUGCC-GuCGCuGUCG- -5'
17056 5' -51.6 NC_004333.2 + 16560 0.66 0.869193
Target:  5'- cGCG-CgcgGCcACAGCGGCcgaGACGGCg -3'
miRNA:   3'- -UGCaGa--UGuUGUUGCCGucgCUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 25258 0.66 0.869193
Target:  5'- uACG-CUGC-ACAACucgAGCGGCAGCa -3'
miRNA:   3'- -UGCaGAUGuUGUUGccgUCGCUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 11904 0.66 0.869193
Target:  5'- uCGUC-GCGGCc-CGGCAuGCG-CAGCg -3'
miRNA:   3'- uGCAGaUGUUGuuGCCGU-CGCuGUCG- -5'
17056 5' -51.6 NC_004333.2 + 18796 0.66 0.864192
Target:  5'- cCGUUUGCuucgcgGGCGACGagccgcuugaagugcGCGuGCGACAGCg -3'
miRNA:   3'- uGCAGAUG------UUGUUGC---------------CGU-CGCUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 7559 0.66 0.860806
Target:  5'- -gGUCggACAugG-CGGuCGGCGGCAGa -3'
miRNA:   3'- ugCAGa-UGUugUuGCC-GUCGCUGUCg -5'
17056 5' -51.6 NC_004333.2 + 5063 0.66 0.860806
Target:  5'- gACGUCgGC-GCGGCGcugaaCAGCGuCAGCa -3'
miRNA:   3'- -UGCAGaUGuUGUUGCc----GUCGCuGUCG- -5'
17056 5' -51.6 NC_004333.2 + 36111 0.66 0.860806
Target:  5'- cACGUacGCAagguugGCGACGGCcugcGCGAcCGGCg -3'
miRNA:   3'- -UGCAgaUGU------UGUUGCCGu---CGCU-GUCG- -5'
17056 5' -51.6 NC_004333.2 + 993 0.66 0.860806
Target:  5'- uGCcUCUGCuGC-GCGGCAGCGcguucuucCGGCg -3'
miRNA:   3'- -UGcAGAUGuUGuUGCCGUCGCu-------GUCG- -5'
17056 5' -51.6 NC_004333.2 + 8990 0.66 0.860806
Target:  5'- cCGUgCUGCcgguGCAGCGcgcGCAGCacgGGCGGCa -3'
miRNA:   3'- uGCA-GAUGu---UGUUGC---CGUCG---CUGUCG- -5'
17056 5' -51.6 NC_004333.2 + 18328 0.66 0.860806
Target:  5'- cGCGcuucgCUGCGAacgaucaguCGACuGGCGGCG-CGGCg -3'
miRNA:   3'- -UGCa----GAUGUU---------GUUG-CCGUCGCuGUCG- -5'
17056 5' -51.6 NC_004333.2 + 38697 0.66 0.860806
Target:  5'- aGC-UCgaGCAGCu-CGGCGGCGguGCGGCa -3'
miRNA:   3'- -UGcAGa-UGUUGuuGCCGUCGC--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.