miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 40587 0.66 0.647882
Target:  5'- cAUCACG-CaggagGACGUCCUGCGcaugggucugccGCCGACc -3'
miRNA:   3'- -UGGUGCuGg----UUGCAGGGCGU------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 35210 0.66 0.647882
Target:  5'- uGCUAuUGACCGGaaaUgCCGCAACUGACa -3'
miRNA:   3'- -UGGU-GCUGGUUgc-AgGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 41174 0.66 0.647882
Target:  5'- -gUACGAUCuGACGUCgggCCGCAacuuuaACCGACu -3'
miRNA:   3'- ugGUGCUGG-UUGCAG---GGCGU------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38620 0.66 0.647882
Target:  5'- cGCCGCuGcCCGugGUgCCCGUucuGAUCGGCc -3'
miRNA:   3'- -UGGUG-CuGGUugCA-GGGCG---UUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 42973 0.66 0.647882
Target:  5'- uGCgACGguGCCGACGccgcgCCUGCAGgCGAUg -3'
miRNA:   3'- -UGgUGC--UGGUUGCa----GGGCGUUgGCUG- -5'
17057 3' -56.5 NC_004333.2 + 13926 0.66 0.647882
Target:  5'- uUCACGGacaCAuggGCGUCaagUGCGACCGGCg -3'
miRNA:   3'- uGGUGCUg--GU---UGCAGg--GCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 28675 0.66 0.647882
Target:  5'- gGCCACGagcgccGCCAGCGcgCCaGCG-CCGAUc -3'
miRNA:   3'- -UGGUGC------UGGUUGCa-GGgCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 37957 0.66 0.636914
Target:  5'- gACCGCGcgcagcuuugauGCCGACGg-CCGCAugCG-Cg -3'
miRNA:   3'- -UGGUGC------------UGGUUGCagGGCGUugGCuG- -5'
17057 3' -56.5 NC_004333.2 + 19898 0.66 0.636914
Target:  5'- aGCuCugGGCCAuccGCGccgUCCGCAucAUCGACg -3'
miRNA:   3'- -UG-GugCUGGU---UGCa--GGGCGU--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38879 0.66 0.636914
Target:  5'- aACC-CGGCCGGCGgugaaaaCCCGaccgugaAGCCGAa -3'
miRNA:   3'- -UGGuGCUGGUUGCa------GGGCg------UUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 7319 0.66 0.636914
Target:  5'- -gCGCGACCAuCG-CCgGCGACCagaaGGCg -3'
miRNA:   3'- ugGUGCUGGUuGCaGGgCGUUGG----CUG- -5'
17057 3' -56.5 NC_004333.2 + 47719 0.66 0.63033
Target:  5'- gGCgGCGGCaCAaacgccgugaagauuGCGUUCCGCAcuGCCGcGCa -3'
miRNA:   3'- -UGgUGCUG-GU---------------UGCAGGGCGU--UGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 19260 0.66 0.627039
Target:  5'- cGCUACGcACCGACGgcaaguaugcgccggCCUGC-GCCGAg -3'
miRNA:   3'- -UGGUGC-UGGUUGCa--------------GGGCGuUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 17889 0.66 0.625941
Target:  5'- gACgGCGGCCAGC-UCgCCGUcgaAACuCGACg -3'
miRNA:   3'- -UGgUGCUGGUUGcAG-GGCG---UUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 784 0.66 0.614974
Target:  5'- aGCCcuuCGACCuugAGCGUgCCgGUcGCCGGCg -3'
miRNA:   3'- -UGGu--GCUGG---UUGCA-GGgCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38299 0.66 0.614974
Target:  5'- cACgCGCGACCGugcACG--CgGCGACCGGCg -3'
miRNA:   3'- -UG-GUGCUGGU---UGCagGgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 4758 0.66 0.614974
Target:  5'- aGCC-CGACCcgAGCGUCUgccugCGCGGgCGGCu -3'
miRNA:   3'- -UGGuGCUGG--UUGCAGG-----GCGUUgGCUG- -5'
17057 3' -56.5 NC_004333.2 + 33005 0.66 0.613878
Target:  5'- -aCGCGACCuACGcacugccgcucgcUCgCCGCAacucaACCGACg -3'
miRNA:   3'- ugGUGCUGGuUGC-------------AG-GGCGU-----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38063 0.66 0.612782
Target:  5'- gACCugGGCCucgauccgaaucGCGUCuacgaccuguaCCGCGAuCCGACc -3'
miRNA:   3'- -UGGugCUGGu-----------UGCAG-----------GGCGUU-GGCUG- -5'
17057 3' -56.5 NC_004333.2 + 44760 0.66 0.6084
Target:  5'- gACCGCGccgcagcuguucuucACCGAagcUCCCGCGACgaCGGCg -3'
miRNA:   3'- -UGGUGC---------------UGGUUgc-AGGGCGUUG--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.