miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 38879 0.66 0.636914
Target:  5'- aACC-CGGCCGGCGgugaaaaCCCGaccgugaAGCCGAa -3'
miRNA:   3'- -UGGuGCUGGUUGCa------GGGCg------UUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 40587 0.66 0.647882
Target:  5'- cAUCACG-CaggagGACGUCCUGCGcaugggucugccGCCGACc -3'
miRNA:   3'- -UGGUGCuGg----UUGCAGGGCGU------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 19260 0.66 0.627039
Target:  5'- cGCUACGcACCGACGgcaaguaugcgccggCCUGC-GCCGAg -3'
miRNA:   3'- -UGGUGC-UGGUUGCa--------------GGGCGuUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 47719 0.66 0.63033
Target:  5'- gGCgGCGGCaCAaacgccgugaagauuGCGUUCCGCAcuGCCGcGCa -3'
miRNA:   3'- -UGgUGCUG-GU---------------UGCAGGGCGU--UGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 33005 0.66 0.613878
Target:  5'- -aCGCGACCuACGcacugccgcucgcUCgCCGCAacucaACCGACg -3'
miRNA:   3'- ugGUGCUGGuUGC-------------AG-GGCGU-----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 4758 0.66 0.614974
Target:  5'- aGCC-CGACCcgAGCGUCUgccugCGCGGgCGGCu -3'
miRNA:   3'- -UGGuGCUGG--UUGCAGG-----GCGUUgGCUG- -5'
17057 3' -56.5 NC_004333.2 + 17889 0.66 0.625941
Target:  5'- gACgGCGGCCAGC-UCgCCGUcgaAACuCGACg -3'
miRNA:   3'- -UGgUGCUGGUUGcAG-GGCG---UUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 27659 0.67 0.571344
Target:  5'- cGCCAgCGAgCGGCGcggCgGCGGCCGGCa -3'
miRNA:   3'- -UGGU-GCUgGUUGCag-GgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 23135 0.67 0.571344
Target:  5'- aACUACGGCgCGACGaacuaCCCGauuCCGGCg -3'
miRNA:   3'- -UGGUGCUG-GUUGCa----GGGCguuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 22345 0.67 0.560539
Target:  5'- cGCCACGaggaaGCCGACGaaaCCUGC-GCCGcACg -3'
miRNA:   3'- -UGGUGC-----UGGUUGCa--GGGCGuUGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 18403 0.67 0.549791
Target:  5'- uGCCGucCGAagcgCAACGcCUCGCGAUCGGCg -3'
miRNA:   3'- -UGGU--GCUg---GUUGCaGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 45494 0.67 0.560539
Target:  5'- gGCCGCcGCCGGCGcgaCgCUGCAagcuGCCGGCg -3'
miRNA:   3'- -UGGUGcUGGUUGCa--G-GGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 18531 0.67 0.559462
Target:  5'- uUCGCaGCCGGCGgcaaCCCgggugcgGCAGCCGGCg -3'
miRNA:   3'- uGGUGcUGGUUGCa---GGG-------CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 45278 0.67 0.549791
Target:  5'- gGCuCGCGAaCGACGUCCCGaAGCuCGAg -3'
miRNA:   3'- -UG-GUGCUgGUUGCAGGGCgUUG-GCUg -5'
17057 3' -56.5 NC_004333.2 + 15141 0.67 0.528497
Target:  5'- uACgCACGugCGGCGcUCaaaGCGAUCGACg -3'
miRNA:   3'- -UG-GUGCugGUUGC-AGgg-CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 27434 0.67 0.560539
Target:  5'- aGCCGCGucGgCGAUGUCCgGCAGCgCGcGCg -3'
miRNA:   3'- -UGGUGC--UgGUUGCAGGgCGUUG-GC-UG- -5'
17057 3' -56.5 NC_004333.2 + 29990 0.67 0.539108
Target:  5'- cGCgCACGACgAGCGcaucaCCCGgCAcGCCGGCa -3'
miRNA:   3'- -UG-GUGCUGgUUGCa----GGGC-GU-UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 16949 0.67 0.539108
Target:  5'- cGCCgcGCGGCCGucGCG-CCgGCAugaccaACCGGCa -3'
miRNA:   3'- -UGG--UGCUGGU--UGCaGGgCGU------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 6529 0.67 0.560539
Target:  5'- gGCgUACGGCCGcag-CCCGCGcCCGACa -3'
miRNA:   3'- -UG-GUGCUGGUugcaGGGCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 25987 0.67 0.560539
Target:  5'- gGCCGCaGCCGcCGaaCCGCcGCCGGCc -3'
miRNA:   3'- -UGGUGcUGGUuGCagGGCGuUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.