Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 22415 | 1.08 | 0.000788 |
Target: 5'- gACCACGACCAACGUCCCGCAACCGACc -3' miRNA: 3'- -UGGUGCUGGUUGCAGGGCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 37155 | 0.8 | 0.09154 |
Target: 5'- gAUCACGugCGGCaUCCCGCAGCgCGGCg -3' miRNA: 3'- -UGGUGCugGUUGcAGGGCGUUG-GCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 8009 | 0.76 | 0.158242 |
Target: 5'- cGCCGCGACCAGCGUCguccagUCGCcuuucuucgacucGCCGACg -3' miRNA: 3'- -UGGUGCUGGUUGCAG------GGCGu------------UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 20337 | 0.75 | 0.203886 |
Target: 5'- gGCCGUG-CCGACGgguaCCGCGACCGGCu -3' miRNA: 3'- -UGGUGCuGGUUGCag--GGCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 46819 | 0.75 | 0.188195 |
Target: 5'- gGCCGCcGCCGGCaagaaaaUCCUGCAACCGGCc -3' miRNA: 3'- -UGGUGcUGGUUGc------AGGGCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 9784 | 0.74 | 0.232552 |
Target: 5'- gACCGUGGCCGGCGUCacgccggCGCAcCCGACa -3' miRNA: 3'- -UGGUGCUGGUUGCAGg------GCGUuGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 32556 | 0.74 | 0.226559 |
Target: 5'- cGCCaACGGCaCGACGUUcgccgaaaCCGUGACCGACg -3' miRNA: 3'- -UGG-UGCUG-GUUGCAG--------GGCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 43387 | 0.74 | 0.220698 |
Target: 5'- -aCGCGcaaucGCUAugGUCCCGCAGCCGcccGCg -3' miRNA: 3'- ugGUGC-----UGGUugCAGGGCGUUGGC---UG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 1921 | 0.74 | 0.2144 |
Target: 5'- aGCCACGcgucugcACCAGCuggCCCGC-ACCGGCg -3' miRNA: 3'- -UGGUGC-------UGGUUGca-GGGCGuUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 30381 | 0.74 | 0.209363 |
Target: 5'- gACCGCGauGCCgAACGUCgaaGCGACCGGCg -3' miRNA: 3'- -UGGUGC--UGG-UUGCAGgg-CGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 39867 | 0.73 | 0.257866 |
Target: 5'- cCCAUGACgGcgccguACGUgCCGCAACCGAa -3' miRNA: 3'- uGGUGCUGgU------UGCAgGGCGUUGGCUg -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 11715 | 0.73 | 0.263864 |
Target: 5'- gGCgGCGugCuggcguccugcgcGAUGUCCgGCAGCCGACc -3' miRNA: 3'- -UGgUGCugG-------------UUGCAGGgCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 36262 | 0.72 | 0.284673 |
Target: 5'- aGCCACGACaugcagcgacacgCGACGUCCUGCgccAugCGAUa -3' miRNA: 3'- -UGGUGCUG-------------GUUGCAGGGCG---UugGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 8628 | 0.72 | 0.278297 |
Target: 5'- gUCACGAaagUCGACGUCaacaucggcgCCGCAACCGAUg -3' miRNA: 3'- uGGUGCU---GGUUGCAG----------GGCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 30937 | 0.72 | 0.285389 |
Target: 5'- -gCACGAUC-ACGUCCgGCGauacGCCGGCg -3' miRNA: 3'- ugGUGCUGGuUGCAGGgCGU----UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 43123 | 0.72 | 0.285389 |
Target: 5'- cGCCGCG-CCGACGUCggCCaaCAGCCGGCc -3' miRNA: 3'- -UGGUGCuGGUUGCAG--GGc-GUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 2632 | 0.72 | 0.281117 |
Target: 5'- gACCGCGcgguucaucgcgcuuGCCGGCGUaucagCCGCAacGCCGGCa -3' miRNA: 3'- -UGGUGC---------------UGGUUGCAg----GGCGU--UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 34264 | 0.72 | 0.305246 |
Target: 5'- gGCCACGAUCGccacggcagccgccGCGcagCCCGUgccGGCCGACu -3' miRNA: 3'- -UGGUGCUGGU--------------UGCa--GGGCG---UUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 47023 | 0.72 | 0.306758 |
Target: 5'- cGCCGCGAUcggauaugcagugCAACGUCgCgCGCAGCaCGGCa -3' miRNA: 3'- -UGGUGCUG-------------GUUGCAG-G-GCGUUG-GCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 38159 | 0.72 | 0.315178 |
Target: 5'- cUCAUGAUCAagcACGUCgCGCAgacgGCCGACa -3' miRNA: 3'- uGGUGCUGGU---UGCAGgGCGU----UGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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