miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 22415 1.08 0.000788
Target:  5'- gACCACGACCAACGUCCCGCAACCGACc -3'
miRNA:   3'- -UGGUGCUGGUUGCAGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 37155 0.8 0.09154
Target:  5'- gAUCACGugCGGCaUCCCGCAGCgCGGCg -3'
miRNA:   3'- -UGGUGCugGUUGcAGGGCGUUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 8009 0.76 0.158242
Target:  5'- cGCCGCGACCAGCGUCguccagUCGCcuuucuucgacucGCCGACg -3'
miRNA:   3'- -UGGUGCUGGUUGCAG------GGCGu------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 46819 0.75 0.188195
Target:  5'- gGCCGCcGCCGGCaagaaaaUCCUGCAACCGGCc -3'
miRNA:   3'- -UGGUGcUGGUUGc------AGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 20337 0.75 0.203886
Target:  5'- gGCCGUG-CCGACGgguaCCGCGACCGGCu -3'
miRNA:   3'- -UGGUGCuGGUUGCag--GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 30381 0.74 0.209363
Target:  5'- gACCGCGauGCCgAACGUCgaaGCGACCGGCg -3'
miRNA:   3'- -UGGUGC--UGG-UUGCAGgg-CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 1921 0.74 0.2144
Target:  5'- aGCCACGcgucugcACCAGCuggCCCGC-ACCGGCg -3'
miRNA:   3'- -UGGUGC-------UGGUUGca-GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 43387 0.74 0.220698
Target:  5'- -aCGCGcaaucGCUAugGUCCCGCAGCCGcccGCg -3'
miRNA:   3'- ugGUGC-----UGGUugCAGGGCGUUGGC---UG- -5'
17057 3' -56.5 NC_004333.2 + 32556 0.74 0.226559
Target:  5'- cGCCaACGGCaCGACGUUcgccgaaaCCGUGACCGACg -3'
miRNA:   3'- -UGG-UGCUG-GUUGCAG--------GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 9784 0.74 0.232552
Target:  5'- gACCGUGGCCGGCGUCacgccggCGCAcCCGACa -3'
miRNA:   3'- -UGGUGCUGGUUGCAGg------GCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39867 0.73 0.257866
Target:  5'- cCCAUGACgGcgccguACGUgCCGCAACCGAa -3'
miRNA:   3'- uGGUGCUGgU------UGCAgGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 11715 0.73 0.263864
Target:  5'- gGCgGCGugCuggcguccugcgcGAUGUCCgGCAGCCGACc -3'
miRNA:   3'- -UGgUGCugG-------------UUGCAGGgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8628 0.72 0.278297
Target:  5'- gUCACGAaagUCGACGUCaacaucggcgCCGCAACCGAUg -3'
miRNA:   3'- uGGUGCU---GGUUGCAG----------GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 2632 0.72 0.281117
Target:  5'- gACCGCGcgguucaucgcgcuuGCCGGCGUaucagCCGCAacGCCGGCa -3'
miRNA:   3'- -UGGUGC---------------UGGUUGCAg----GGCGU--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 36262 0.72 0.284673
Target:  5'- aGCCACGACaugcagcgacacgCGACGUCCUGCgccAugCGAUa -3'
miRNA:   3'- -UGGUGCUG-------------GUUGCAGGGCG---UugGCUG- -5'
17057 3' -56.5 NC_004333.2 + 30937 0.72 0.285389
Target:  5'- -gCACGAUC-ACGUCCgGCGauacGCCGGCg -3'
miRNA:   3'- ugGUGCUGGuUGCAGGgCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 43123 0.72 0.285389
Target:  5'- cGCCGCG-CCGACGUCggCCaaCAGCCGGCc -3'
miRNA:   3'- -UGGUGCuGGUUGCAG--GGc-GUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39205 0.72 0.292622
Target:  5'- -gCACGGCCcGCGcaUCCCGuCGGCCGAg -3'
miRNA:   3'- ugGUGCUGGuUGC--AGGGC-GUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 34264 0.72 0.305246
Target:  5'- gGCCACGAUCGccacggcagccgccGCGcagCCCGUgccGGCCGACu -3'
miRNA:   3'- -UGGUGCUGGU--------------UGCa--GGGCG---UUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 47023 0.72 0.306758
Target:  5'- cGCCGCGAUcggauaugcagugCAACGUCgCgCGCAGCaCGGCa -3'
miRNA:   3'- -UGGUGCUG-------------GUUGCAG-G-GCGUUG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.