miRNA display CGI


Results 21 - 40 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 38159 0.72 0.315178
Target:  5'- cUCAUGAUCAagcACGUCgCGCAgacgGCCGACa -3'
miRNA:   3'- uGGUGCUGGU---UGCAGgGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 3326 0.71 0.322983
Target:  5'- cGCgGCGAucuucuUCAGCGUCUCGCGGCCaGCg -3'
miRNA:   3'- -UGgUGCU------GGUUGCAGGGCGUUGGcUG- -5'
17057 3' -56.5 NC_004333.2 + 30861 0.71 0.330932
Target:  5'- cGCCugGcgguucuccuCCGACGUCUCGCGcAUCGACu -3'
miRNA:   3'- -UGGugCu---------GGUUGCAGGGCGU-UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 17627 0.71 0.330932
Target:  5'- gGCCGCGcCCG--GUgCCGUGGCCGACa -3'
miRNA:   3'- -UGGUGCuGGUugCAgGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 9565 0.71 0.339023
Target:  5'- cACCACGGgCAGCGgcgcgCCCggcuGUAGCUGGCg -3'
miRNA:   3'- -UGGUGCUgGUUGCa----GGG----CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 25398 0.71 0.347257
Target:  5'- aGCCAucCGGCgAGCGcgCCUGCAgcguGCCGGCg -3'
miRNA:   3'- -UGGU--GCUGgUUGCa-GGGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38693 0.71 0.347257
Target:  5'- cGCCGCG-CUGAaauUCCCGCAgccGCCGGCg -3'
miRNA:   3'- -UGGUGCuGGUUgc-AGGGCGU---UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15101 0.71 0.347257
Target:  5'- gAUCACGcugaccgaguuGCCAGCG-CUCGUGGCCGACc -3'
miRNA:   3'- -UGGUGC-----------UGGUUGCaGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 11823 0.7 0.364151
Target:  5'- uAUCACGACCGAUGcuuacggcaaUCuuGCAACCGuagGCg -3'
miRNA:   3'- -UGGUGCUGGUUGC----------AGggCGUUGGC---UG- -5'
17057 3' -56.5 NC_004333.2 + 36287 0.7 0.364151
Target:  5'- gGCCGCGACgAcaaggugcucGCG-CCCGUuucGGCCGACc -3'
miRNA:   3'- -UGGUGCUGgU----------UGCaGGGCG---UUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 37366 0.7 0.372809
Target:  5'- cGCgACGugCAccGCGUCgCGCGGCCGuCc -3'
miRNA:   3'- -UGgUGCugGU--UGCAGgGCGUUGGCuG- -5'
17057 3' -56.5 NC_004333.2 + 224 0.7 0.381605
Target:  5'- cGCCgACGACCAGCGcgCCgaGCAgcuuGCCGAa -3'
miRNA:   3'- -UGG-UGCUGGUUGCa-GGg-CGU----UGGCUg -5'
17057 3' -56.5 NC_004333.2 + 19411 0.7 0.406036
Target:  5'- cGCCGCGACCcgcgcggucgacgcGGCG-CUCGCGcaguugcugGCCGACc -3'
miRNA:   3'- -UGGUGCUGG--------------UUGCaGGGCGU---------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 22852 0.7 0.40881
Target:  5'- -aCGCGACCGuuacguACGUCgCgGCAgucGCCGGCg -3'
miRNA:   3'- ugGUGCUGGU------UGCAG-GgCGU---UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39207 0.7 0.412528
Target:  5'- cGCgCACGGCCGcACGauccagCCCGCGcacgcgauggacagcGCCGGCg -3'
miRNA:   3'- -UG-GUGCUGGU-UGCa-----GGGCGU---------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 22443 0.69 0.418144
Target:  5'- uUCACG-CCGACcggCCUGCAGCUGGCc -3'
miRNA:   3'- uGGUGCuGGUUGca-GGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8521 0.69 0.418144
Target:  5'- cGCCucgGCGACCGugaaguucGCGUCCgGCAGCaguCGGCc -3'
miRNA:   3'- -UGG---UGCUGGU--------UGCAGGgCGUUG---GCUG- -5'
17057 3' -56.5 NC_004333.2 + 27605 0.69 0.418144
Target:  5'- cACCACGGC--GCGaCCCGacgcGCCGACg -3'
miRNA:   3'- -UGGUGCUGguUGCaGGGCgu--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 28538 0.69 0.418144
Target:  5'- aGCUguugACGGCCAGCGUCggCCGCGcucGCCGcGCu -3'
miRNA:   3'- -UGG----UGCUGGUUGCAG--GGCGU---UGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 21500 0.69 0.418144
Target:  5'- cACCugGCGACCuGACGcuaUCgGCAGCCGGCg -3'
miRNA:   3'- -UGG--UGCUGG-UUGCa--GGgCGUUGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.