Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 40587 | 0.66 | 0.647882 |
Target: 5'- cAUCACG-CaggagGACGUCCUGCGcaugggucugccGCCGACc -3' miRNA: 3'- -UGGUGCuGg----UUGCAGGGCGU------------UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 35210 | 0.66 | 0.647882 |
Target: 5'- uGCUAuUGACCGGaaaUgCCGCAACUGACa -3' miRNA: 3'- -UGGU-GCUGGUUgc-AgGGCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 41174 | 0.66 | 0.647882 |
Target: 5'- -gUACGAUCuGACGUCgggCCGCAacuuuaACCGACu -3' miRNA: 3'- ugGUGCUGG-UUGCAG---GGCGU------UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 38620 | 0.66 | 0.647882 |
Target: 5'- cGCCGCuGcCCGugGUgCCCGUucuGAUCGGCc -3' miRNA: 3'- -UGGUG-CuGGUugCA-GGGCG---UUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 42973 | 0.66 | 0.647882 |
Target: 5'- uGCgACGguGCCGACGccgcgCCUGCAGgCGAUg -3' miRNA: 3'- -UGgUGC--UGGUUGCa----GGGCGUUgGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 13926 | 0.66 | 0.647882 |
Target: 5'- uUCACGGacaCAuggGCGUCaagUGCGACCGGCg -3' miRNA: 3'- uGGUGCUg--GU---UGCAGg--GCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 28675 | 0.66 | 0.647882 |
Target: 5'- gGCCACGagcgccGCCAGCGcgCCaGCG-CCGAUc -3' miRNA: 3'- -UGGUGC------UGGUUGCa-GGgCGUuGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 37957 | 0.66 | 0.636914 |
Target: 5'- gACCGCGcgcagcuuugauGCCGACGg-CCGCAugCG-Cg -3' miRNA: 3'- -UGGUGC------------UGGUUGCagGGCGUugGCuG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 19898 | 0.66 | 0.636914 |
Target: 5'- aGCuCugGGCCAuccGCGccgUCCGCAucAUCGACg -3' miRNA: 3'- -UG-GugCUGGU---UGCa--GGGCGU--UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 38879 | 0.66 | 0.636914 |
Target: 5'- aACC-CGGCCGGCGgugaaaaCCCGaccgugaAGCCGAa -3' miRNA: 3'- -UGGuGCUGGUUGCa------GGGCg------UUGGCUg -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 7319 | 0.66 | 0.636914 |
Target: 5'- -gCGCGACCAuCG-CCgGCGACCagaaGGCg -3' miRNA: 3'- ugGUGCUGGUuGCaGGgCGUUGG----CUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 47719 | 0.66 | 0.63033 |
Target: 5'- gGCgGCGGCaCAaacgccgugaagauuGCGUUCCGCAcuGCCGcGCa -3' miRNA: 3'- -UGgUGCUG-GU---------------UGCAGGGCGU--UGGC-UG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 19260 | 0.66 | 0.627039 |
Target: 5'- cGCUACGcACCGACGgcaaguaugcgccggCCUGC-GCCGAg -3' miRNA: 3'- -UGGUGC-UGGUUGCa--------------GGGCGuUGGCUg -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 17889 | 0.66 | 0.625941 |
Target: 5'- gACgGCGGCCAGC-UCgCCGUcgaAACuCGACg -3' miRNA: 3'- -UGgUGCUGGUUGcAG-GGCG---UUG-GCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 784 | 0.66 | 0.614974 |
Target: 5'- aGCCcuuCGACCuugAGCGUgCCgGUcGCCGGCg -3' miRNA: 3'- -UGGu--GCUGG---UUGCA-GGgCGuUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 38299 | 0.66 | 0.614974 |
Target: 5'- cACgCGCGACCGugcACG--CgGCGACCGGCg -3' miRNA: 3'- -UG-GUGCUGGU---UGCagGgCGUUGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 4758 | 0.66 | 0.614974 |
Target: 5'- aGCC-CGACCcgAGCGUCUgccugCGCGGgCGGCu -3' miRNA: 3'- -UGGuGCUGG--UUGCAGG-----GCGUUgGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 33005 | 0.66 | 0.613878 |
Target: 5'- -aCGCGACCuACGcacugccgcucgcUCgCCGCAacucaACCGACg -3' miRNA: 3'- ugGUGCUGGuUGC-------------AG-GGCGU-----UGGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 38063 | 0.66 | 0.612782 |
Target: 5'- gACCugGGCCucgauccgaaucGCGUCuacgaccuguaCCGCGAuCCGACc -3' miRNA: 3'- -UGGugCUGGu-----------UGCAG-----------GGCGUU-GGCUG- -5' |
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17057 | 3' | -56.5 | NC_004333.2 | + | 44760 | 0.66 | 0.6084 |
Target: 5'- gACCGCGccgcagcuguucuucACCGAagcUCCCGCGACgaCGGCg -3' miRNA: 3'- -UGGUGC---------------UGGUUgc-AGGGCGUUG--GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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