miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 1303 0.66 0.604022
Target:  5'- -aCGCGAUCGGCGUgaaUUGCAGCUGAUu -3'
miRNA:   3'- ugGUGCUGGUUGCAg--GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 46173 0.66 0.593093
Target:  5'- aGCCcagauguggGCGACCGagggcugggcGCGUCUCGC-GCCGGa -3'
miRNA:   3'- -UGG---------UGCUGGU----------UGCAGGGCGuUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 9628 0.66 0.593093
Target:  5'- cACCgGCuGCCGGCGgcgcgCCUGCGcCCGGCu -3'
miRNA:   3'- -UGG-UGcUGGUUGCa----GGGCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 46303 0.66 0.593093
Target:  5'- cGCCAauccgGGCCAggcGCGUCagaaCCGCAcgacACCGGCc -3'
miRNA:   3'- -UGGUg----CUGGU---UGCAG----GGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 35710 0.66 0.593093
Target:  5'- aAUgACGACCcgGGCGUgCCG--GCCGACg -3'
miRNA:   3'- -UGgUGCUGG--UUGCAgGGCguUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15834 0.66 0.593093
Target:  5'- cGCUAuCGGgCAGCGaCCCGgCAGCCGuGCa -3'
miRNA:   3'- -UGGU-GCUgGUUGCaGGGC-GUUGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 44295 0.66 0.592002
Target:  5'- cACCAUGACCAaucccguuacgcuGCG-CCCGU--CCGAa -3'
miRNA:   3'- -UGGUGCUGGU-------------UGCaGGGCGuuGGCUg -5'
17057 3' -56.5 NC_004333.2 + 40653 0.67 0.586552
Target:  5'- gGCCgaaGCGGCCGACGaacuguucggcgcaCUCGCGACCG-Ca -3'
miRNA:   3'- -UGG---UGCUGGUUGCa-------------GGGCGUUGGCuG- -5'
17057 3' -56.5 NC_004333.2 + 23135 0.67 0.571344
Target:  5'- aACUACGGCgCGACGaacuaCCCGauuCCGGCg -3'
miRNA:   3'- -UGGUGCUG-GUUGCa----GGGCguuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 46234 0.67 0.571344
Target:  5'- --gGCGGCCcGCGUCgCCGguGCgGGCc -3'
miRNA:   3'- uggUGCUGGuUGCAG-GGCguUGgCUG- -5'
17057 3' -56.5 NC_004333.2 + 27659 0.67 0.571344
Target:  5'- cGCCAgCGAgCGGCGcggCgGCGGCCGGCa -3'
miRNA:   3'- -UGGU-GCUgGUUGCag-GgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39231 0.67 0.571344
Target:  5'- aGCUGCGugCAAUGcucgaCCGCAccccgagcgGCCGGCa -3'
miRNA:   3'- -UGGUGCugGUUGCag---GGCGU---------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 24934 0.67 0.560539
Target:  5'- uACCcUGACCGgagaaGCGcaCCCGCAAUCGAg -3'
miRNA:   3'- -UGGuGCUGGU-----UGCa-GGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 25987 0.67 0.560539
Target:  5'- gGCCGCaGCCGcCGaaCCGCcGCCGGCc -3'
miRNA:   3'- -UGGUGcUGGUuGCagGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 27434 0.67 0.560539
Target:  5'- aGCCGCGucGgCGAUGUCCgGCAGCgCGcGCg -3'
miRNA:   3'- -UGGUGC--UgGUUGCAGGgCGUUG-GC-UG- -5'
17057 3' -56.5 NC_004333.2 + 45494 0.67 0.560539
Target:  5'- gGCCGCcGCCGGCGcgaCgCUGCAagcuGCCGGCg -3'
miRNA:   3'- -UGGUGcUGGUUGCa--G-GGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 6529 0.67 0.560539
Target:  5'- gGCgUACGGCCGcag-CCCGCGcCCGACa -3'
miRNA:   3'- -UG-GUGCUGGUugcaGGGCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 22345 0.67 0.560539
Target:  5'- cGCCACGaggaaGCCGACGaaaCCUGC-GCCGcACg -3'
miRNA:   3'- -UGGUGC-----UGGUUGCa--GGGCGuUGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 18531 0.67 0.559462
Target:  5'- uUCGCaGCCGGCGgcaaCCCgggugcgGCAGCCGGCg -3'
miRNA:   3'- uGGUGcUGGUUGCa---GGG-------CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 45278 0.67 0.549791
Target:  5'- gGCuCGCGAaCGACGUCCCGaAGCuCGAg -3'
miRNA:   3'- -UG-GUGCUgGUUGCAGGGCgUUG-GCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.