miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 25303 0.67 0.549791
Target:  5'- aACCG-GGCCGACG-CCgGCGACUGcCg -3'
miRNA:   3'- -UGGUgCUGGUUGCaGGgCGUUGGCuG- -5'
17057 3' -56.5 NC_004333.2 + 19617 0.67 0.549791
Target:  5'- gUCACGGCgAGCGcggCgagCGCGGCCGACg -3'
miRNA:   3'- uGGUGCUGgUUGCa--Gg--GCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 22969 0.67 0.549791
Target:  5'- cGCCGCcGgCAGCGUCgCGguACCGGu -3'
miRNA:   3'- -UGGUGcUgGUUGCAGgGCguUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 45278 0.67 0.549791
Target:  5'- gGCuCGCGAaCGACGUCCCGaAGCuCGAg -3'
miRNA:   3'- -UG-GUGCUgGUUGCAGGGCgUUG-GCUg -5'
17057 3' -56.5 NC_004333.2 + 25684 0.67 0.546579
Target:  5'- cGCgGCGACCugaucagccugAACG-CCCGCGagaauggcuugcucGCCGGCc -3'
miRNA:   3'- -UGgUGCUGG-----------UUGCaGGGCGU--------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 29990 0.67 0.539108
Target:  5'- cGCgCACGACgAGCGcaucaCCCGgCAcGCCGGCa -3'
miRNA:   3'- -UG-GUGCUGgUUGCa----GGGC-GU-UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 16949 0.67 0.539108
Target:  5'- cGCCgcGCGGCCGucGCG-CCgGCAugaccaACCGGCa -3'
miRNA:   3'- -UGG--UGCUGGU--UGCaGGgCGU------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 36108 0.67 0.539108
Target:  5'- aGCCACGuacgcaagguuGgCGACGgCCugCGCGACCGGCg -3'
miRNA:   3'- -UGGUGC-----------UgGUUGCaGG--GCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 22747 0.67 0.539108
Target:  5'- -nCACGcCCGGCGUgacggCCGCcGCCGGCa -3'
miRNA:   3'- ugGUGCuGGUUGCAg----GGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 40036 0.67 0.528497
Target:  5'- cGCCACGGCgCgGACGcCUCGCAagacaucaaaAUCGACg -3'
miRNA:   3'- -UGGUGCUG-G-UUGCaGGGCGU----------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15141 0.67 0.528497
Target:  5'- uACgCACGugCGGCGcUCaaaGCGAUCGACg -3'
miRNA:   3'- -UG-GUGCugGUUGC-AGgg-CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 17505 0.68 0.517963
Target:  5'- gACCGC-ACCGACcUgCUGCAGCCGGu -3'
miRNA:   3'- -UGGUGcUGGUUGcAgGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 2573 0.68 0.507514
Target:  5'- uGuuGCGACCGaccggcaucACGaUCUCGCGACCGGg -3'
miRNA:   3'- -UggUGCUGGU---------UGC-AGGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 29629 0.68 0.507514
Target:  5'- cGCCGCG-CCGGC-UgCCGCAcccggguugccGCCGGCu -3'
miRNA:   3'- -UGGUGCuGGUUGcAgGGCGU-----------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 24303 0.68 0.507514
Target:  5'- -gCGCGACCuggAACag-CCGCGACCGACc -3'
miRNA:   3'- ugGUGCUGG---UUGcagGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8355 0.68 0.507514
Target:  5'- aAUCugGAUCAGCGaguugaCCGUGGCCGAUu -3'
miRNA:   3'- -UGGugCUGGUUGCag----GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 7836 0.68 0.497156
Target:  5'- cGCCA-GAUCGACGcggCCUGC-GCCGGCc -3'
miRNA:   3'- -UGGUgCUGGUUGCa--GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 23375 0.68 0.497156
Target:  5'- gUCGCGcagcuGCCgAACGUgCCCGCAACCuACa -3'
miRNA:   3'- uGGUGC-----UGG-UUGCA-GGGCGUUGGcUG- -5'
17057 3' -56.5 NC_004333.2 + 22674 0.68 0.497156
Target:  5'- gGCUugGGa-AACGUgaCUGCAACCGACg -3'
miRNA:   3'- -UGGugCUggUUGCAg-GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39543 0.68 0.497156
Target:  5'- cGCCGCGccgaGCuCGACGUCgCGC-AUCGGCu -3'
miRNA:   3'- -UGGUGC----UG-GUUGCAGgGCGuUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.