miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 224 0.7 0.381605
Target:  5'- cGCCgACGACCAGCGcgCCgaGCAgcuuGCCGAa -3'
miRNA:   3'- -UGG-UGCUGGUUGCa-GGg-CGU----UGGCUg -5'
17057 3' -56.5 NC_004333.2 + 784 0.66 0.614974
Target:  5'- aGCCcuuCGACCuugAGCGUgCCgGUcGCCGGCg -3'
miRNA:   3'- -UGGu--GCUGG---UUGCA-GGgCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 1303 0.66 0.604022
Target:  5'- -aCGCGAUCGGCGUgaaUUGCAGCUGAUu -3'
miRNA:   3'- ugGUGCUGGUUGCAg--GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 1921 0.74 0.2144
Target:  5'- aGCCACGcgucugcACCAGCuggCCCGC-ACCGGCg -3'
miRNA:   3'- -UGGUGC-------UGGUUGca-GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 2302 0.69 0.418144
Target:  5'- uACCGUGGCCGGCacgCCCGCGuugaACUGGCg -3'
miRNA:   3'- -UGGUGCUGGUUGca-GGGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 2573 0.68 0.507514
Target:  5'- uGuuGCGACCGaccggcaucACGaUCUCGCGACCGGg -3'
miRNA:   3'- -UggUGCUGGU---------UGC-AGGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 2632 0.72 0.281117
Target:  5'- gACCGCGcgguucaucgcgcuuGCCGGCGUaucagCCGCAacGCCGGCa -3'
miRNA:   3'- -UGGUGC---------------UGGUUGCAg----GGCGU--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 3326 0.71 0.322983
Target:  5'- cGCgGCGAucuucuUCAGCGUCUCGCGGCCaGCg -3'
miRNA:   3'- -UGgUGCU------GGUUGCAGGGCGUUGGcUG- -5'
17057 3' -56.5 NC_004333.2 + 4758 0.66 0.614974
Target:  5'- aGCC-CGACCcgAGCGUCUgccugCGCGGgCGGCu -3'
miRNA:   3'- -UGGuGCUGG--UUGCAGG-----GCGUUgGCUG- -5'
17057 3' -56.5 NC_004333.2 + 5869 0.69 0.446905
Target:  5'- cGCCACGcCCGugGUgCCGCuGCCcauGCa -3'
miRNA:   3'- -UGGUGCuGGUugCAgGGCGuUGGc--UG- -5'
17057 3' -56.5 NC_004333.2 + 6079 0.69 0.437195
Target:  5'- cUCGCGACaCGccuCGUCgCGCAGCaCGACg -3'
miRNA:   3'- uGGUGCUG-GUu--GCAGgGCGUUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 6529 0.67 0.560539
Target:  5'- gGCgUACGGCCGcag-CCCGCGcCCGACa -3'
miRNA:   3'- -UG-GUGCUGGUugcaGGGCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 7319 0.66 0.636914
Target:  5'- -gCGCGACCAuCG-CCgGCGACCagaaGGCg -3'
miRNA:   3'- ugGUGCUGGUuGCaGGgCGUUGG----CUG- -5'
17057 3' -56.5 NC_004333.2 + 7836 0.68 0.497156
Target:  5'- cGCCA-GAUCGACGcggCCUGC-GCCGGCc -3'
miRNA:   3'- -UGGUgCUGGUUGCa--GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8009 0.76 0.158242
Target:  5'- cGCCGCGACCAGCGUCguccagUCGCcuuucuucgacucGCCGACg -3'
miRNA:   3'- -UGGUGCUGGUUGCAG------GGCGu------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8355 0.68 0.507514
Target:  5'- aAUCugGAUCAGCGaguugaCCGUGGCCGAUu -3'
miRNA:   3'- -UGGugCUGGUUGCag----GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8521 0.69 0.418144
Target:  5'- cGCCucgGCGACCGugaaguucGCGUCCgGCAGCaguCGGCc -3'
miRNA:   3'- -UGG---UGCUGGU--------UGCAGGgCGUUG---GCUG- -5'
17057 3' -56.5 NC_004333.2 + 8591 0.68 0.476732
Target:  5'- uUCAUGAUCAcGCGUCCgaaaCGCAaACCGACc -3'
miRNA:   3'- uGGUGCUGGU-UGCAGG----GCGU-UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8628 0.72 0.278297
Target:  5'- gUCACGAaagUCGACGUCaacaucggcgCCGCAACCGAUg -3'
miRNA:   3'- uGGUGCU---GGUUGCAG----------GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 9565 0.71 0.339023
Target:  5'- cACCACGGgCAGCGgcgcgCCCggcuGUAGCUGGCg -3'
miRNA:   3'- -UGGUGCUgGUUGCa----GGG----CGUUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.