miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 9628 0.66 0.593093
Target:  5'- cACCgGCuGCCGGCGgcgcgCCUGCGcCCGGCu -3'
miRNA:   3'- -UGG-UGcUGGUUGCa----GGGCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 9784 0.74 0.232552
Target:  5'- gACCGUGGCCGGCGUCacgccggCGCAcCCGACa -3'
miRNA:   3'- -UGGUGCUGGUUGCAGg------GCGUuGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 10837 0.69 0.418144
Target:  5'- aGCCaggGCGACgCAgauucgagcGCGUCgagcaccgCCGCGACCGACu -3'
miRNA:   3'- -UGG---UGCUG-GU---------UGCAG--------GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 11715 0.73 0.263864
Target:  5'- gGCgGCGugCuggcguccugcgcGAUGUCCgGCAGCCGACc -3'
miRNA:   3'- -UGgUGCugG-------------UUGCAGGgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 11823 0.7 0.364151
Target:  5'- uAUCACGACCGAUGcuuacggcaaUCuuGCAACCGuagGCg -3'
miRNA:   3'- -UGGUGCUGGUUGC----------AGggCGUUGGC---UG- -5'
17057 3' -56.5 NC_004333.2 + 13926 0.66 0.647882
Target:  5'- uUCACGGacaCAuggGCGUCaagUGCGACCGGCg -3'
miRNA:   3'- uGGUGCUg--GU---UGCAGg--GCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15101 0.71 0.347257
Target:  5'- gAUCACGcugaccgaguuGCCAGCG-CUCGUGGCCGACc -3'
miRNA:   3'- -UGGUGC-----------UGGUUGCaGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15141 0.67 0.528497
Target:  5'- uACgCACGugCGGCGcUCaaaGCGAUCGACg -3'
miRNA:   3'- -UG-GUGCugGUUGC-AGgg-CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15435 0.69 0.455745
Target:  5'- gGCaGCGACCugcgcguGACGUUCUGCucGCCGGCu -3'
miRNA:   3'- -UGgUGCUGG-------UUGCAGGGCGu-UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 15834 0.66 0.593093
Target:  5'- cGCUAuCGGgCAGCGaCCCGgCAGCCGuGCa -3'
miRNA:   3'- -UGGU-GCUgGUUGCaGGGC-GUUGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 16949 0.67 0.539108
Target:  5'- cGCCgcGCGGCCGucGCG-CCgGCAugaccaACCGGCa -3'
miRNA:   3'- -UGG--UGCUGGU--UGCaGGgCGU------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 17505 0.68 0.517963
Target:  5'- gACCGC-ACCGACcUgCUGCAGCCGGu -3'
miRNA:   3'- -UGGUGcUGGUUGcAgGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 17627 0.71 0.330932
Target:  5'- gGCCGCGcCCG--GUgCCGUGGCCGACa -3'
miRNA:   3'- -UGGUGCuGGUugCAgGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 17889 0.66 0.625941
Target:  5'- gACgGCGGCCAGC-UCgCCGUcgaAACuCGACg -3'
miRNA:   3'- -UGgUGCUGGUUGcAG-GGCG---UUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 18403 0.67 0.549791
Target:  5'- uGCCGucCGAagcgCAACGcCUCGCGAUCGGCg -3'
miRNA:   3'- -UGGU--GCUg---GUUGCaGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 18472 0.69 0.437195
Target:  5'- aACC-CGGCaccggaGGCGUaCCCGCcguuGCCGGCa -3'
miRNA:   3'- -UGGuGCUGg-----UUGCA-GGGCGu---UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 18531 0.67 0.559462
Target:  5'- uUCGCaGCCGGCGgcaaCCCgggugcgGCAGCCGGCg -3'
miRNA:   3'- uGGUGcUGGUUGCa---GGG-------CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 19260 0.66 0.627039
Target:  5'- cGCUACGcACCGACGgcaaguaugcgccggCCUGC-GCCGAg -3'
miRNA:   3'- -UGGUGC-UGGUUGCa--------------GGGCGuUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 19411 0.7 0.406036
Target:  5'- cGCCGCGACCcgcgcggucgacgcGGCG-CUCGCGcaguugcugGCCGACc -3'
miRNA:   3'- -UGGUGCUGG--------------UUGCaGGGCGU---------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 19617 0.67 0.549791
Target:  5'- gUCACGGCgAGCGcggCgagCGCGGCCGACg -3'
miRNA:   3'- uGGUGCUGgUUGCa--Gg--GCGUUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.