miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 47719 0.66 0.63033
Target:  5'- gGCgGCGGCaCAaacgccgugaagauuGCGUUCCGCAcuGCCGcGCa -3'
miRNA:   3'- -UGgUGCUG-GU---------------UGCAGGGCGU--UGGC-UG- -5'
17057 3' -56.5 NC_004333.2 + 47023 0.72 0.306758
Target:  5'- cGCCGCGAUcggauaugcagugCAACGUCgCgCGCAGCaCGGCa -3'
miRNA:   3'- -UGGUGCUG-------------GUUGCAG-G-GCGUUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 46819 0.75 0.188195
Target:  5'- gGCCGCcGCCGGCaagaaaaUCCUGCAACCGGCc -3'
miRNA:   3'- -UGGUGcUGGUUGc------AGGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 46303 0.66 0.593093
Target:  5'- cGCCAauccgGGCCAggcGCGUCagaaCCGCAcgacACCGGCc -3'
miRNA:   3'- -UGGUg----CUGGU---UGCAG----GGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 46234 0.67 0.571344
Target:  5'- --gGCGGCCcGCGUCgCCGguGCgGGCc -3'
miRNA:   3'- uggUGCUGGuUGCAG-GGCguUGgCUG- -5'
17057 3' -56.5 NC_004333.2 + 46173 0.66 0.593093
Target:  5'- aGCCcagauguggGCGACCGagggcugggcGCGUCUCGC-GCCGGa -3'
miRNA:   3'- -UGG---------UGCUGGU----------UGCAGGGCGuUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 45494 0.67 0.560539
Target:  5'- gGCCGCcGCCGGCGcgaCgCUGCAagcuGCCGGCg -3'
miRNA:   3'- -UGGUGcUGGUUGCa--G-GGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 45278 0.67 0.549791
Target:  5'- gGCuCGCGAaCGACGUCCCGaAGCuCGAg -3'
miRNA:   3'- -UG-GUGCUgGUUGCAGGGCgUUG-GCUg -5'
17057 3' -56.5 NC_004333.2 + 45001 0.68 0.497156
Target:  5'- uACCACGGCgCGcUGUCCgGCcGCuCGACc -3'
miRNA:   3'- -UGGUGCUG-GUuGCAGGgCGuUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 44760 0.66 0.6084
Target:  5'- gACCGCGccgcagcuguucuucACCGAagcUCCCGCGACgaCGGCg -3'
miRNA:   3'- -UGGUGC---------------UGGUUgc-AGGGCGUUG--GCUG- -5'
17057 3' -56.5 NC_004333.2 + 44295 0.66 0.592002
Target:  5'- cACCAUGACCAaucccguuacgcuGCG-CCCGU--CCGAa -3'
miRNA:   3'- -UGGUGCUGGU-------------UGCaGGGCGuuGGCUg -5'
17057 3' -56.5 NC_004333.2 + 43387 0.74 0.220698
Target:  5'- -aCGCGcaaucGCUAugGUCCCGCAGCCGcccGCg -3'
miRNA:   3'- ugGUGC-----UGGUugCAGGGCGUUGGC---UG- -5'
17057 3' -56.5 NC_004333.2 + 43123 0.72 0.285389
Target:  5'- cGCCGCG-CCGACGUCggCCaaCAGCCGGCc -3'
miRNA:   3'- -UGGUGCuGGUUGCAG--GGc-GUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 42973 0.66 0.647882
Target:  5'- uGCgACGguGCCGACGccgcgCCUGCAGgCGAUg -3'
miRNA:   3'- -UGgUGC--UGGUUGCa----GGGCGUUgGCUG- -5'
17057 3' -56.5 NC_004333.2 + 41174 0.66 0.647882
Target:  5'- -gUACGAUCuGACGUCgggCCGCAacuuuaACCGACu -3'
miRNA:   3'- ugGUGCUGG-UUGCAG---GGCGU------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 40653 0.67 0.586552
Target:  5'- gGCCgaaGCGGCCGACGaacuguucggcgcaCUCGCGACCG-Ca -3'
miRNA:   3'- -UGG---UGCUGGUUGCa-------------GGGCGUUGGCuG- -5'
17057 3' -56.5 NC_004333.2 + 40587 0.66 0.647882
Target:  5'- cAUCACG-CaggagGACGUCCUGCGcaugggucugccGCCGACc -3'
miRNA:   3'- -UGGUGCuGg----UUGCAGGGCGU------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 40036 0.67 0.528497
Target:  5'- cGCCACGGCgCgGACGcCUCGCAagacaucaaaAUCGACg -3'
miRNA:   3'- -UGGUGCUG-G-UUGCaGGGCGU----------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39867 0.73 0.257866
Target:  5'- cCCAUGACgGcgccguACGUgCCGCAACCGAa -3'
miRNA:   3'- uGGUGCUGgU------UGCAgGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 39543 0.68 0.497156
Target:  5'- cGCCGCGccgaGCuCGACGUCgCGC-AUCGGCu -3'
miRNA:   3'- -UGGUGC----UG-GUUGCAGgGCGuUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.