miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 37155 0.8 0.09154
Target:  5'- gAUCACGugCGGCaUCCCGCAGCgCGGCg -3'
miRNA:   3'- -UGGUGCugGUUGcAGGGCGUUG-GCUG- -5'
17057 3' -56.5 NC_004333.2 + 2302 0.69 0.418144
Target:  5'- uACCGUGGCCGGCacgCCCGCGuugaACUGGCg -3'
miRNA:   3'- -UGGUGCUGGUUGca-GGGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 18472 0.69 0.437195
Target:  5'- aACC-CGGCaccggaGGCGUaCCCGCcguuGCCGGCa -3'
miRNA:   3'- -UGGuGCUGg-----UUGCA-GGGCGu---UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38620 0.66 0.647882
Target:  5'- cGCCGCuGcCCGugGUgCCCGUucuGAUCGGCc -3'
miRNA:   3'- -UGGUG-CuGGUugCA-GGGCG---UUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 1921 0.74 0.2144
Target:  5'- aGCCACGcgucugcACCAGCuggCCCGC-ACCGGCg -3'
miRNA:   3'- -UGGUGC-------UGGUUGca-GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 43387 0.74 0.220698
Target:  5'- -aCGCGcaaucGCUAugGUCCCGCAGCCGcccGCg -3'
miRNA:   3'- ugGUGC-----UGGUugCAGGGCGUUGGC---UG- -5'
17057 3' -56.5 NC_004333.2 + 11715 0.73 0.263864
Target:  5'- gGCgGCGugCuggcguccugcgcGAUGUCCgGCAGCCGACc -3'
miRNA:   3'- -UGgUGCugG-------------UUGCAGGgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 2632 0.72 0.281117
Target:  5'- gACCGCGcgguucaucgcgcuuGCCGGCGUaucagCCGCAacGCCGGCa -3'
miRNA:   3'- -UGGUGC---------------UGGUUGCAg----GGCGU--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39205 0.72 0.292622
Target:  5'- -gCACGGCCcGCGcaUCCCGuCGGCCGAg -3'
miRNA:   3'- ugGUGCUGGuUGC--AGGGC-GUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 37366 0.7 0.372809
Target:  5'- cGCgACGugCAccGCGUCgCGCGGCCGuCc -3'
miRNA:   3'- -UGgUGCugGU--UGCAGgGCGUUGGCuG- -5'
17057 3' -56.5 NC_004333.2 + 17627 0.71 0.330932
Target:  5'- gGCCGCGcCCG--GUgCCGUGGCCGACa -3'
miRNA:   3'- -UGGUGCuGGUugCAgGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 30937 0.72 0.285389
Target:  5'- -gCACGAUC-ACGUCCgGCGauacGCCGGCg -3'
miRNA:   3'- ugGUGCUGGuUGCAGGgCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8009 0.76 0.158242
Target:  5'- cGCCGCGACCAGCGUCguccagUCGCcuuucuucgacucGCCGACg -3'
miRNA:   3'- -UGGUGCUGGUUGCAG------GGCGu------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 25398 0.71 0.347257
Target:  5'- aGCCAucCGGCgAGCGcgCCUGCAgcguGCCGGCg -3'
miRNA:   3'- -UGGU--GCUGgUUGCa-GGGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 20337 0.75 0.203886
Target:  5'- gGCCGUG-CCGACGgguaCCGCGACCGGCu -3'
miRNA:   3'- -UGGUGCuGGUUGCag--GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 36262 0.72 0.284673
Target:  5'- aGCCACGACaugcagcgacacgCGACGUCCUGCgccAugCGAUa -3'
miRNA:   3'- -UGGUGCUG-------------GUUGCAGGGCG---UugGCUG- -5'
17057 3' -56.5 NC_004333.2 + 38693 0.71 0.347257
Target:  5'- cGCCGCG-CUGAaauUCCCGCAgccGCCGGCg -3'
miRNA:   3'- -UGGUGCuGGUUgc-AGGGCGU---UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 31312 0.69 0.437195
Target:  5'- cGCCgACG-CCGagcACGgcgCCCGCAauGCCGGCc -3'
miRNA:   3'- -UGG-UGCuGGU---UGCa--GGGCGU--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 30381 0.74 0.209363
Target:  5'- gACCGCGauGCCgAACGUCgaaGCGACCGGCg -3'
miRNA:   3'- -UGGUGC--UGG-UUGCAGgg-CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39867 0.73 0.257866
Target:  5'- cCCAUGACgGcgccguACGUgCCGCAACCGAa -3'
miRNA:   3'- uGGUGCUGgU------UGCAgGGCGUUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.