miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17057 3' -56.5 NC_004333.2 + 23418 0.68 0.476732
Target:  5'- aGCC-CGGC--ACGUaCCCGCcGCCGGCc -3'
miRNA:   3'- -UGGuGCUGguUGCA-GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 18472 0.69 0.437195
Target:  5'- aACC-CGGCaccggaGGCGUaCCCGCcguuGCCGGCa -3'
miRNA:   3'- -UGGuGCUGg-----UUGCA-GGGCGu---UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 30937 0.72 0.285389
Target:  5'- -gCACGAUC-ACGUCCgGCGauacGCCGGCg -3'
miRNA:   3'- ugGUGCUGGuUGCAGGgCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 30381 0.74 0.209363
Target:  5'- gACCGCGauGCCgAACGUCgaaGCGACCGGCg -3'
miRNA:   3'- -UGGUGC--UGG-UUGCAGgg-CGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 25303 0.67 0.549791
Target:  5'- aACCG-GGCCGACG-CCgGCGACUGcCg -3'
miRNA:   3'- -UGGUgCUGGUUGCaGGgCGUUGGCuG- -5'
17057 3' -56.5 NC_004333.2 + 24303 0.68 0.507514
Target:  5'- -gCGCGACCuggAACag-CCGCGACCGACc -3'
miRNA:   3'- ugGUGCUGG---UUGcagGGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 2302 0.69 0.418144
Target:  5'- uACCGUGGCCGGCacgCCCGCGuugaACUGGCg -3'
miRNA:   3'- -UGGUGCUGGUUGca-GGGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 20337 0.75 0.203886
Target:  5'- gGCCGUG-CCGACGgguaCCGCGACCGGCu -3'
miRNA:   3'- -UGGUGCuGGUUGCag--GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8355 0.68 0.507514
Target:  5'- aAUCugGAUCAGCGaguugaCCGUGGCCGAUu -3'
miRNA:   3'- -UGGugCUGGUUGCag----GGCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 8009 0.76 0.158242
Target:  5'- cGCCGCGACCAGCGUCguccagUCGCcuuucuucgacucGCCGACg -3'
miRNA:   3'- -UGGUGCUGGUUGCAG------GGCGu------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 31312 0.69 0.437195
Target:  5'- cGCCgACG-CCGagcACGgcgCCCGCAauGCCGGCc -3'
miRNA:   3'- -UGG-UGCuGGU---UGCa--GGGCGU--UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 7836 0.68 0.497156
Target:  5'- cGCCA-GAUCGACGcggCCUGC-GCCGGCc -3'
miRNA:   3'- -UGGUgCUGGUUGCa--GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 25398 0.71 0.347257
Target:  5'- aGCCAucCGGCgAGCGcgCCUGCAgcguGCCGGCg -3'
miRNA:   3'- -UGGU--GCUGgUUGCa-GGGCGU----UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 39205 0.72 0.292622
Target:  5'- -gCACGGCCcGCGcaUCCCGuCGGCCGAg -3'
miRNA:   3'- ugGUGCUGGuUGC--AGGGC-GUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 11715 0.73 0.263864
Target:  5'- gGCgGCGugCuggcguccugcgcGAUGUCCgGCAGCCGACc -3'
miRNA:   3'- -UGgUGCugG-------------UUGCAGGgCGUUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 1921 0.74 0.2144
Target:  5'- aGCCACGcgucugcACCAGCuggCCCGC-ACCGGCg -3'
miRNA:   3'- -UGGUGC-------UGGUUGca-GGGCGuUGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 24934 0.67 0.560539
Target:  5'- uACCcUGACCGgagaaGCGcaCCCGCAAUCGAg -3'
miRNA:   3'- -UGGuGCUGGU-----UGCa-GGGCGUUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 22969 0.67 0.549791
Target:  5'- cGCCGCcGgCAGCGUCgCGguACCGGu -3'
miRNA:   3'- -UGGUGcUgGUUGCAGgGCguUGGCUg -5'
17057 3' -56.5 NC_004333.2 + 25684 0.67 0.546579
Target:  5'- cGCgGCGACCugaucagccugAACG-CCCGCGagaauggcuugcucGCCGGCc -3'
miRNA:   3'- -UGgUGCUGG-----------UUGCaGGGCGU--------------UGGCUG- -5'
17057 3' -56.5 NC_004333.2 + 17505 0.68 0.517963
Target:  5'- gACCGC-ACCGACcUgCUGCAGCCGGu -3'
miRNA:   3'- -UGGUGcUGGUUGcAgGGCGUUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.