Results 1 - 20 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 23135 | 0.67 | 0.571344 |
Target: 5'- aACUACGGCgCGACGaacuaCCCGauuCCGGCg -3' miRNA: 3'- -UGGUGCUG-GUUGCa----GGGCguuGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 38063 | 0.66 | 0.612782 |
Target: 5'- gACCugGGCCucgauccgaaucGCGUCuacgaccuguaCCGCGAuCCGACc -3' miRNA: 3'- -UGGugCUGGu-----------UGCAG-----------GGCGUU-GGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 44760 | 0.66 | 0.6084 |
Target: 5'- gACCGCGccgcagcuguucuucACCGAagcUCCCGCGACgaCGGCg -3' miRNA: 3'- -UGGUGC---------------UGGUUgc-AGGGCGUUG--GCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 35710 | 0.66 | 0.593093 |
Target: 5'- aAUgACGACCcgGGCGUgCCG--GCCGACg -3' miRNA: 3'- -UGgUGCUGG--UUGCAgGGCguUGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 46303 | 0.66 | 0.593093 |
Target: 5'- cGCCAauccgGGCCAggcGCGUCagaaCCGCAcgacACCGGCc -3' miRNA: 3'- -UGGUg----CUGGU---UGCAG----GGCGU----UGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 15834 | 0.66 | 0.593093 |
Target: 5'- cGCUAuCGGgCAGCGaCCCGgCAGCCGuGCa -3' miRNA: 3'- -UGGU-GCUgGUUGCaGGGC-GUUGGC-UG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 44295 | 0.66 | 0.592002 |
Target: 5'- cACCAUGACCAaucccguuacgcuGCG-CCCGU--CCGAa -3' miRNA: 3'- -UGGUGCUGGU-------------UGCaGGGCGuuGGCUg -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 27659 | 0.67 | 0.571344 |
Target: 5'- cGCCAgCGAgCGGCGcggCgGCGGCCGGCa -3' miRNA: 3'- -UGGU-GCUgGUUGCag-GgCGUUGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 46234 | 0.67 | 0.571344 |
Target: 5'- --gGCGGCCcGCGUCgCCGguGCgGGCc -3' miRNA: 3'- uggUGCUGGuUGCAG-GGCguUGgCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 33005 | 0.66 | 0.613878 |
Target: 5'- -aCGCGACCuACGcacugccgcucgcUCgCCGCAacucaACCGACg -3' miRNA: 3'- ugGUGCUGGuUGC-------------AG-GGCGU-----UGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 4758 | 0.66 | 0.614974 |
Target: 5'- aGCC-CGACCcgAGCGUCUgccugCGCGGgCGGCu -3' miRNA: 3'- -UGGuGCUGG--UUGCAGG-----GCGUUgGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 17889 | 0.66 | 0.625941 |
Target: 5'- gACgGCGGCCAGC-UCgCCGUcgaAACuCGACg -3' miRNA: 3'- -UGgUGCUGGUUGcAG-GGCG---UUG-GCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 13926 | 0.66 | 0.647882 |
Target: 5'- uUCACGGacaCAuggGCGUCaagUGCGACCGGCg -3' miRNA: 3'- uGGUGCUg--GU---UGCAGg--GCGUUGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 42973 | 0.66 | 0.647882 |
Target: 5'- uGCgACGguGCCGACGccgcgCCUGCAGgCGAUg -3' miRNA: 3'- -UGgUGC--UGGUUGCa----GGGCGUUgGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 28675 | 0.66 | 0.647882 |
Target: 5'- gGCCACGagcgccGCCAGCGcgCCaGCG-CCGAUc -3' miRNA: 3'- -UGGUGC------UGGUUGCa-GGgCGUuGGCUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 37957 | 0.66 | 0.636914 |
Target: 5'- gACCGCGcgcagcuuugauGCCGACGg-CCGCAugCG-Cg -3' miRNA: 3'- -UGGUGC------------UGGUUGCagGGCGUugGCuG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 7319 | 0.66 | 0.636914 |
Target: 5'- -gCGCGACCAuCG-CCgGCGACCagaaGGCg -3' miRNA: 3'- ugGUGCUGGUuGCaGGgCGUUGG----CUG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 38879 | 0.66 | 0.636914 |
Target: 5'- aACC-CGGCCGGCGgugaaaaCCCGaccgugaAGCCGAa -3' miRNA: 3'- -UGGuGCUGGUUGCa------GGGCg------UUGGCUg -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 47719 | 0.66 | 0.63033 |
Target: 5'- gGCgGCGGCaCAaacgccgugaagauuGCGUUCCGCAcuGCCGcGCa -3' miRNA: 3'- -UGgUGCUG-GU---------------UGCAGGGCGU--UGGC-UG- -5' |
|||||||
17057 | 3' | -56.5 | NC_004333.2 | + | 19260 | 0.66 | 0.627039 |
Target: 5'- cGCUACGcACCGACGgcaaguaugcgccggCCUGC-GCCGAg -3' miRNA: 3'- -UGGUGC-UGGUUGCa--------------GGGCGuUGGCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home