miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 3' -46.9 NC_004333.2 + 7116 0.68 0.951393
Target:  5'- cACGUGCGGauUGGcGGCGCgaaacguGUCGACGa -3'
miRNA:   3'- aUGUAUGCU--ACCuUCGUG-------UAGUUGCg -5'
17058 3' -46.9 NC_004333.2 + 38421 0.68 0.941798
Target:  5'- cGCucguugACGAcGGgcGCGCAUcCGGCGCu -3'
miRNA:   3'- aUGua----UGCUaCCuuCGUGUA-GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 40865 0.69 0.930456
Target:  5'- cGCcgGCGAUGGucGCGCGacUCGguaucuacuGCGCc -3'
miRNA:   3'- aUGuaUGCUACCuuCGUGU--AGU---------UGCG- -5'
17058 3' -46.9 NC_004333.2 + 17148 0.69 0.930456
Target:  5'- cGCAUGCGcgaGGAAgucguGCGCGUCGACa- -3'
miRNA:   3'- aUGUAUGCua-CCUU-----CGUGUAGUUGcg -5'
17058 3' -46.9 NC_004333.2 + 22230 0.69 0.924301
Target:  5'- cGCGUAC--UGGccGCcgGCAUCGACGCc -3'
miRNA:   3'- aUGUAUGcuACCuuCG--UGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 48153 0.7 0.903907
Target:  5'- aACGaACGuAUGuGAGGCGCGagAACGCg -3'
miRNA:   3'- aUGUaUGC-UAC-CUUCGUGUagUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 30132 0.7 0.888729
Target:  5'- cGCAgcaGcgGGcAGCGCgAUCAGCGCg -3'
miRNA:   3'- aUGUaugCuaCCuUCGUG-UAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 37805 0.71 0.854772
Target:  5'- aGCGgcGCGAUGcGAAGCGCGUCG-CGa -3'
miRNA:   3'- aUGUa-UGCUAC-CUUCGUGUAGUuGCg -5'
17058 3' -46.9 NC_004333.2 + 38745 0.71 0.845579
Target:  5'- cGCAUgACGAUGGAAGCggccacgagcgGCAUCGcCGa -3'
miRNA:   3'- aUGUA-UGCUACCUUCG-----------UGUAGUuGCg -5'
17058 3' -46.9 NC_004333.2 + 14061 0.72 0.817482
Target:  5'- aGCA-GCGAUGGggGUGCGcaggcaaagcugaugCAGCGCg -3'
miRNA:   3'- aUGUaUGCUACCuuCGUGUa--------------GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 11346 0.72 0.806307
Target:  5'- gGCcgGCGAUGGccguAGCGCGcacUCGACGg -3'
miRNA:   3'- aUGuaUGCUACCu---UCGUGU---AGUUGCg -5'
17058 3' -46.9 NC_004333.2 + 17251 0.73 0.773489
Target:  5'- gACGUgaucgucGCGAUGaAGGCaaGCGUCGACGCg -3'
miRNA:   3'- aUGUA-------UGCUACcUUCG--UGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 12357 0.74 0.706861
Target:  5'- cGCG-ACGGUcGGggGCGCcgUAGCGCc -3'
miRNA:   3'- aUGUaUGCUA-CCuuCGUGuaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 10707 0.74 0.706861
Target:  5'- cUGCAUGCGuuUGGcGAGCGCcggaauGUCGGCGCc -3'
miRNA:   3'- -AUGUAUGCu-ACC-UUCGUG------UAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 39480 0.74 0.695192
Target:  5'- gGCGaa-GAUGGAAGCGCG-CGGCGUa -3'
miRNA:   3'- aUGUaugCUACCUUCGUGUaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 2483 0.74 0.695192
Target:  5'- gGCGUGCGuuGUGGuAGCugAUC-GCGCg -3'
miRNA:   3'- aUGUAUGC--UACCuUCGugUAGuUGCG- -5'
17058 3' -46.9 NC_004333.2 + 12079 0.74 0.695192
Target:  5'- uUGCGUACG-UGGcuGGCGCG-CAGCGCc -3'
miRNA:   3'- -AUGUAUGCuACCu-UCGUGUaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 5674 0.75 0.636057
Target:  5'- cGCGUcuuCGAUGaucgucAGCGCAUCAGCGCg -3'
miRNA:   3'- aUGUAu--GCUACcu----UCGUGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 30889 0.75 0.624165
Target:  5'- cGCAU-CGAcUGGuugaacgcgucGAGCGCGUCGACGCu -3'
miRNA:   3'- aUGUAuGCU-ACC-----------UUCGUGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 39233 0.76 0.612282
Target:  5'- cGCAcGCGAUGGAcAGCGC--CGGCGCg -3'
miRNA:   3'- aUGUaUGCUACCU-UCGUGuaGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.