miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 5' -44.7 NC_004333.2 + 44850 0.67 0.997165
Target:  5'- gCGAGAcgcUGAAGAag-AUCGcCGCGCGCg -3'
miRNA:   3'- -GCUUU---ACUUUUgcaUGGUaGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 4220 0.67 0.996585
Target:  5'- uGAcAUGGAuACGUGCauacggUAUCGCcguGCGCa -3'
miRNA:   3'- gCUuUACUUuUGCAUG------GUAGCG---UGCG- -5'
17058 5' -44.7 NC_004333.2 + 5649 0.67 0.996585
Target:  5'- -----cGAAcuCGUACCAguugccgucUCGCGCGUc -3'
miRNA:   3'- gcuuuaCUUuuGCAUGGU---------AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 4245 0.67 0.995911
Target:  5'- uCGgcGUGAGGAU--GCCG-CGCACGUu -3'
miRNA:   3'- -GCuuUACUUUUGcaUGGUaGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 47384 0.68 0.995131
Target:  5'- aUGAAAcGAAAGCGccgACCGaCGCGCaaGCa -3'
miRNA:   3'- -GCUUUaCUUUUGCa--UGGUaGCGUG--CG- -5'
17058 5' -44.7 NC_004333.2 + 15259 0.68 0.995131
Target:  5'- gCGAAAUGAGcGACGauuUGCCGUgcUGCggcgGCGCg -3'
miRNA:   3'- -GCUUUACUU-UUGC---AUGGUA--GCG----UGCG- -5'
17058 5' -44.7 NC_004333.2 + 42789 0.68 0.995131
Target:  5'- gGAAgcuauGUGAAGGCGUcaGCCGcuuUUGCuCGCg -3'
miRNA:   3'- gCUU-----UACUUUUGCA--UGGU---AGCGuGCG- -5'
17058 5' -44.7 NC_004333.2 + 21636 0.68 0.994234
Target:  5'- uCGAuccgGAAGGCaUGCUG-CGCGCGCa -3'
miRNA:   3'- -GCUuua-CUUUUGcAUGGUaGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 42309 0.68 0.994234
Target:  5'- cCGAGGcGuaucGCGUGCUGUUGCAgCGCg -3'
miRNA:   3'- -GCUUUaCuuu-UGCAUGGUAGCGU-GCG- -5'
17058 5' -44.7 NC_004333.2 + 38287 0.68 0.994234
Target:  5'- aCGAGAUcGAugcacGCGcgACCGU-GCACGCg -3'
miRNA:   3'- -GCUUUA-CUuu---UGCa-UGGUAgCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 18171 0.68 0.994138
Target:  5'- cCGAu-UGccGGCGUGCCGggugaugcgcucgUCGUGCGCg -3'
miRNA:   3'- -GCUuuACuuUUGCAUGGU-------------AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 45735 0.68 0.993841
Target:  5'- gCGcAGGUGuucgccgcgcCGUACCAagGCACGCu -3'
miRNA:   3'- -GC-UUUACuuuu------GCAUGGUagCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 40325 0.68 0.993209
Target:  5'- gCGAGcUGGAAAUG-GCCggCGCAgGCc -3'
miRNA:   3'- -GCUUuACUUUUGCaUGGuaGCGUgCG- -5'
17058 5' -44.7 NC_004333.2 + 17933 0.68 0.993209
Target:  5'- aCGucAUGA--ACGcACUgAUCGCGCGCg -3'
miRNA:   3'- -GCuuUACUuuUGCaUGG-UAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 8048 0.68 0.993209
Target:  5'- aCGAuccGUGGAuauagacgaAGCGUGCCAUCauGC-CGCc -3'
miRNA:   3'- -GCUu--UACUU---------UUGCAUGGUAG--CGuGCG- -5'
17058 5' -44.7 NC_004333.2 + 8941 0.68 0.993209
Target:  5'- uCGggGUGcgguCG-AgCAUUGCACGCa -3'
miRNA:   3'- -GCuuUACuuuuGCaUgGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 19227 0.68 0.993209
Target:  5'- uCGAccgcGUGAAcaacGCGUGCC-UCGgCGCGCc -3'
miRNA:   3'- -GCUu---UACUUu---UGCAUGGuAGC-GUGCG- -5'
17058 5' -44.7 NC_004333.2 + 47847 0.68 0.993209
Target:  5'- gGAGGUGAGcAUGUGgC-UCGgCGCGCu -3'
miRNA:   3'- gCUUUACUUuUGCAUgGuAGC-GUGCG- -5'
17058 5' -44.7 NC_004333.2 + 2793 0.68 0.993209
Target:  5'- uGAAGcGGuuGCGcagGgCAUCGUACGCg -3'
miRNA:   3'- gCUUUaCUuuUGCa--UgGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 15795 0.68 0.992528
Target:  5'- cCGAGAaccccgacgcggcgcUGAAcguCGUGCUG-CGCACGCu -3'
miRNA:   3'- -GCUUU---------------ACUUuu-GCAUGGUaGCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.