miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 32917 0.66 0.638011
Target:  5'- -gCACGGCaaaucgucgcuauuUCGCGCUgcuUGGCACCCu -3'
miRNA:   3'- agGUGCCGau------------GGCGUGGu--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 42407 0.66 0.636914
Target:  5'- -gCGagaGGCUAUCG-ACCGUGACAUUCc -3'
miRNA:   3'- agGUg--CCGAUGGCgUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 29509 0.66 0.636914
Target:  5'- uUCCAC-GCUuuaCGCGCUuuGUGACACUUc -3'
miRNA:   3'- -AGGUGcCGAug-GCGUGG--UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45064 0.66 0.625941
Target:  5'- aCCGC-GCgGCCGCGCCcgGGCAa-- -3'
miRNA:   3'- aGGUGcCGaUGGCGUGGuaCUGUggg -5'
17059 5' -56.6 NC_004333.2 + 41568 0.66 0.625941
Target:  5'- -aC-CGGCUucaaCGCGCCAuucguUGACugCCu -3'
miRNA:   3'- agGuGCCGAug--GCGUGGU-----ACUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 3595 0.66 0.625941
Target:  5'- aUCGCGGCgAUCGUAuucgcCCAgucgGGCGCCUg -3'
miRNA:   3'- aGGUGCCGaUGGCGU-----GGUa---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38612 0.66 0.625941
Target:  5'- gCCG-GGCgcGCCGCugcCCGUGGUGCCCg -3'
miRNA:   3'- aGGUgCCGa-UGGCGu--GGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 34748 0.66 0.625941
Target:  5'- aUCCAUgaucaGGCguucgGCCGCGC----GCACCCg -3'
miRNA:   3'- -AGGUG-----CCGa----UGGCGUGguacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 15718 0.66 0.625941
Target:  5'- gCUGCGGCUcgucGCgGCGCUgaagGGCGCCg -3'
miRNA:   3'- aGGUGCCGA----UGgCGUGGua--CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 21635 0.66 0.625941
Target:  5'- -gCGCgGGCUccgugcaguucGCCGCACCugucGGCGCgCCg -3'
miRNA:   3'- agGUG-CCGA-----------UGGCGUGGua--CUGUG-GG- -5'
17059 5' -56.6 NC_004333.2 + 11290 0.66 0.614974
Target:  5'- gCCGCGcGCUguugaACUGCGCCGU--CGCCUu -3'
miRNA:   3'- aGGUGC-CGA-----UGGCGUGGUAcuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 17061 0.66 0.614974
Target:  5'- cUCGCGGUguuccaGCCGCGCCGgaACAUCg -3'
miRNA:   3'- aGGUGCCGa-----UGGCGUGGUacUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 12221 0.66 0.614974
Target:  5'- cUCgACGGCUugaaugcgcagAUCGCGCuCAUGACgACUg -3'
miRNA:   3'- -AGgUGCCGA-----------UGGCGUG-GUACUG-UGGg -5'
17059 5' -56.6 NC_004333.2 + 14724 0.66 0.614974
Target:  5'- gCC-CGGCgcGCCGCuGCCAauGCugCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG-UGGUacUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 4208 0.66 0.614974
Target:  5'- gCCugGauuuGCaGCUGCGCguUGACGCUCg -3'
miRNA:   3'- aGGugC----CGaUGGCGUGguACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 34240 0.66 0.614974
Target:  5'- gCCGcCGGU---CGCACU-UGACGCCCa -3'
miRNA:   3'- aGGU-GCCGaugGCGUGGuACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45583 0.66 0.613878
Target:  5'- -aUugGGCgaccuucacgACCGCcuggacgGCCGUGAUugCCg -3'
miRNA:   3'- agGugCCGa---------UGGCG-------UGGUACUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 21778 0.66 0.604022
Target:  5'- gCCAuuCGGCgaagUGCCGCGCgaGUGGCAgCUg -3'
miRNA:   3'- aGGU--GCCG----AUGGCGUGg-UACUGUgGG- -5'
17059 5' -56.6 NC_004333.2 + 2604 0.66 0.604022
Target:  5'- aCCG-GGCUGgucgaGCGCCAUGAgCACCg -3'
miRNA:   3'- aGGUgCCGAUgg---CGUGGUACU-GUGGg -5'
17059 5' -56.6 NC_004333.2 + 18109 0.66 0.604022
Target:  5'- gCUACGGCaucgacCCGCGCUuUGGCACg- -3'
miRNA:   3'- aGGUGCCGau----GGCGUGGuACUGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.